Hippoglossus stenolepis (Pacific halibut): 118124570
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Entry
118124570 CDS
T08308
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118124570 (cica)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118124570 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
118124570
NCBI-ProteinID:
XP_035038436
LinkDB
All DBs
Position
17:complement(579869..608638)
Genome browser
AA seq
2512 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGAGEAPEGGERRDSDENRDRSRSPQNQTPSSCFSSNS
HSESSQPDPIRERDTAEGEGLHREGPSETTASLVIDSEKLLTHSDDRSVRSAVSGSSHSD
SGASSCSNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCLSTTASNHSNTASSTPP
PLPLSGGVLNHGSTSSGSDVGIAHHDGIVHSRSLLDDFHSRTTGREGPLDSSPGPPTLSL
GVERPAGGEGVRDAERVSPPLPRCSSTDTASEHSADLEVAGDTHVLTQMSAHAPSSLPDA
LSDALAKGLKNQRVLARQLRRRSDEEGGGERSYEGGSSEMVFRAGVVRKVSGEFGSLEVQ
LNGEKMMCRYPYRHDSPPGVVDIILDAPPPGVHPIPIGTRVCVPFGNEEGSVGHWQLYRE
GVVTQIDTHPAVANRYRVLLSEGKPHSAEEEEDGRVAAAATQAVWVSRQTLRLLVPPWDL
DLPSGGGREEDDRVREKEREREDREEVDVEQEVCRLSRGMAPGVGPVMGRGIPYPGMVPV
SSTSGHSISSPVTPVSVLSLAPGREWEIENDLERERDLQRKQEREMERERERERENVKQQ
QHQQQQHHPYMPLTPEEDMEVSHFNMVPMGAILSGAKTMAIPQHRHIVSKPPPGYLNPHL
SVVRGIGIPSAHLALNPHPTPSPILLGLDPAAAGAIITTPQLPPLPPISSSTASSSRVEK
ASGGGSNSGAAGGGSGSGSTSSSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWR
RLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGGRERGGASSTGTLTPSDLRLGGGRAS
SEFDWDETSRESSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAASMLVSLGSSRSGT
PSFSPISNQSPFSPTPSPSPSPLFGFRPANFSPITAPASLTPRRHRQLSGTKMGTPGAER
ERHLSGIVPTFQTNLTFTVPMSPSKRKLDTHPPPPLPTVQDYQTKPEHHQLVGIAGGMLG
EPLLGHSPAAFRVLSPLSQPTTPSSLSFPRSRSTTSRPPSSAASTPPPMLVSPTPPSPLP
QEPSPRRIVPLRDSPVIVRNPDVPLAKFSDGPLGRRERSTSREHSLPQHTAPPGLQAPVP
INGATTNGAVLLRSPTLVLVTSSSSLTPATVGHTSLSSPSTPGSMSTSMGSVLSSSGSGG
RERERKPEGHQDPSGGPLPQPVACHPTPTALLPLILPADSPHPAPRKQIIMGRPGTVWTN
VEPRSVPVFPWHSLVPFLEPSQSGAAAQPADGQQLVNQSKEPRCGVALVSDGRAGPPVLE
RGSPSCPPPANDNPPTDRGGADSETESDTDDPFSPGVANDAAPSSGPIKRRTQSLSALPK
DADRKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPNEKQQY
HDLAFQVKEAHFRAHPDWKWCNKDRRKSLSEGRGTPKEPRERSMSESIDPLSEAQTAEGK
GVGSGWPGGSERRGGLFTGQPPRPRAFSQSAVHTLEQSEGDLEKEDGASLFHGRRPPPSL
YHSRVSEDMTSDEERMVICEEEGDDDVMEDSCAEGSIDLKCKERVTDSDEDEPDGQHGFQ
PVSRSALPSSSPSIPPADSTSSKGNGAGGAEDGSERKRKRGTDGGEEGSEGGTKREETAA
GGGEGGGASSLSITLSTPSTQPLVTVAQQGVTQVFGTVRIAPTVVTNVVRPIASTPIPIA
SKPVEGAITLSALSQDKKATLLIGGGGPQQLPITAGGGYLSSSSPPGPVSVTPVGGSSLV
TSLVLGGSFPAAHPVQVLAPQPPQPHSQTPLPVLQPQLHPTAAFSSLTPPSGSKPLTQVQ
YVLPTENPSSPQLTQQQILSLSTNAALANGVHSGAGVRVSPGIRVQTQSPGLQSKMLVPM
ETVRRGSTPPHPSTISLVAPPLPVQNGSATGNKIIQIAPMPVVQTNVHPSGAAAVHPGNT
FPVTMASVVAPGAASPQTVLLTSPPTRITYVQSGPGVTTATPQQATPSPGPAYLPSPLAT
LGFTAIAPSGQTLVQPIVGPAPPLNCQPQIPPGPTTAAAGRQVLTAIYPAPTVALATGVV
SVTSVLPTLGASAAQDVTHPASPSAAGAQGSASATPQPSVGVEVELKVEVKRESPLDPQL
EEGGQAMSVASCMSRDVTVKKEEDMEGLYIKEEIVRDGQVKDRRGEAEEEHERRMKESSE
KRRGHETDREDHSMGNSSKEVGPRSPPPLSSGLDPPPPPAAEREPPSSSKKTKFRPPPLK
KTPDSLEKVLSETYFEERFAELPEFNPEEVLPSPTLQSLATSPRAILGSYRRKRRNSTDL
EPAAEDPSSPRRKTRRLSSCSSEPNTPKSAAKCEGEIFTFDRAGTEGEDLLGDFERVPYS
SLRRTLDQRRALVMQLFKEHGFFPSAQATAAFQGRYSDTFPTKVCLQLKIREVRQKIMQT
ATPGTFELGGSADVNPAPSHSSSFNQSAREDGGAEQQGDRSRSPEEPKSEGS
NT seq
7539 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgattaaaaagcagggccgccgctcgcctccctctacccgggccaaagggggg
aagcgtcgcggagcgggggaggccccagaaggaggagagaggagagactcagatgagaac
agagacagaagcagatccccacaaaaccaaactccctcctcttgtttttcttctaattca
cactcggagtcctctcagcccgacccaatcagagagcgggacactgcggagggggagggg
cttcacagagagggcccgtcagagacgacggcgtcgctcgtgatcgattctgagaaattg
ctgacacactcggatgacagatcggtgcggtcagctgtgagcggcagtagccacagtgac
agtggtgctagcagttgtagtaacagtagtacaccaagcgccaacaacagcccaaacccc
gcctccagccggaaaacggccaccttcaaggcccgtgttcccaagaagaagtacacctct
gaacactgtttgtctacgactgctagtaaccatagcaacactgcctccagcacgcctcct
cctcttcctctgagcggcggtgtccttaaccacgggtcaacaagttcaggaagtgacgtc
ggcatcgcgcaccacgatggcatcgttcatagcaggagcctgctggacgacttccacagc
aggacgactggaagggaggggcctctggacagctccccaggaccccccactctgtcgctg
ggagtggagaggcctgcaggaggtgaaggggtgagagatgcagagcgagtgtcgcccccc
ctgccacgctgctcctcaacagacactgccagcgagcactcagctgaccttgaggtggct
ggcgacacacacgtcctcacacagatgtctgcacatgcaccatccagtctccctgatgct
ctgtcagacgctctggccaaagggctgaagaatcaacgtgtccttgctcgtcagctgagg
agaagaagtgacgaggagggaggaggcgaaaggagttatgaaggggggagttcagagatg
gtgttccgggctggggtggtccgtaaggtcagtggtgaatttggaagcctggaggtgcaa
ctgaatggggagaagatgatgtgtcgttatccgtatcggcatgacagccccccaggggtg
gtggacattatcctagatgcccccccgcctggtgtccatccaatacctattggtacccgt
gtgtgcgtaccgtttggcaatgaggagggcagtgtaggtcactggcaattgtaccgagaa
ggtgtggtgactcagatcgacacgcaccctgcagtggccaaccgataccgtgtcctgttg
tctgagggaaaacctcactctgcggaggaggaagaagatggcagagtggcagctgctgct
acccaggcagtgtgggtctcccgacaaacactccgtcttctggtgccgccttgggacctg
gatttgccatctggaggaggacgagaggaagacgacagggtcagagaaaaggaaagggaa
cgggaggacagggaggaggtggatgtggagcaggaagtgtgccgcttgagccgagggatg
gccccaggagtggggccagtgatggggagagggattccctacccaggcatggtccctgtt
tcatccacatcaggccacagtatttcctccccagttactccagtgtcagtcctcagtctg
gctcctggtcgagagtgggaaattgagaatgacttggagagggagagggacctccagaga
aaacaggaaagagagatggagcgagagcgagagcgagaaagggagaatgtaaaacagcag
cagcaccaacagcagcaacatcacccatacatgccacttacccctgaagaagacatggag
gtgtcccacttcaacatggtcccaatgggggcgatcttatctggggccaaaacaatggca
attccccaacaccgccacattgtttctaagcccccgcctggctacctcaatccccacctg
tctgtggtgcggggcatcgggatcccctccgcccacctagccttgaacccccaccctact
ccttcacctatcctgttaggccttgatccagcagcagcaggagctatcattaccaccccc
cagctccctcctcttcctcccatctcctcttccactgcatcctcctccagagtagagaaa
gcctcaggaggaggctctaacagtggagcagcaggtggtggatctggatcaggttcgact
tcctcctcctcttcccgttcccgcaccccactgacagctgcccagcaaaagtacaagaag
ggagatgtggtgtgcacgccaacaggcatccgtaagaagttcaatggaaaacagtggagg
agactgtgctctcgggagggctgctctaaagagtctcagcgcagaggatactgctccaga
cacctctcaatgaggactaaggagatggaggccagtggaggtggccgggagaggggtgga
gccagcagcactgggactctgacgccatctgacctccgtctaggtggtgggagagccagc
tcagagttcgactgggacgagacatcacgggaaagcagtgaggccagcagccgtggagga
gactcacgtccccgcctagtccttccttctttgcttcctcaggacctctctcgtttcgac
tttgatgagtgcgaggcagcgagcatgttggtctccctggggagctcccgctcaggcaca
ccctcgttctctcccatctccaaccagtcgcccttctcccctaccccatcgccctcaccc
tctccgctcttcggctttcgtcctgccaatttcagtcccattactgcccctgcctcactt
accccacgccgccatcgccagcttagtggcactaagatgggcacaccaggtgctgagcga
gagcggcacctgtcggggatcgtgcccacatttcagaccaacctcacctttacagtcccc
atgagccccagcaaaagaaagctcgacactcacccgccccctccactgcctacagtccaa
gactaccagaccaaacctgagcatcatcagcttgtggggatagcgggaggaatgttggga
gagccactcctgggccacagccctgccgccttcagagtcctctccccactgagtcagccg
acaactccctcctcactctccttcccccggtcccgcagcaccaccagcagaccaccatcc
tccgctgcctccacacctccgcccatgctggtctctcccactcctccctccccactgccc
caggaaccgtcaccacgccgcattgttccccttcgtgattccccagtcattgtccgcaac
cctgatgtccccttggccaagttctctgacggcccattaggaaggagagagagaagcacg
tcaagggagcacagcctgccccaacacacagctcccccgggcctgcaggcgcctgttccc
atcaacggggccaccaccaacggtgcagttctcctgcgcagccccacactggtcctggtc
acctccagctcgtccctgactccagccacagtcggccacacgtccctctccagcccctcc
acccccggttcaatgtccacttcaatgggctcagtcctgtcgtcctccggttctggaggc
agggagagggagaggaaacccgagggacaccaggacccctctggagggccgctgccacag
ccggtagcctgtcaccccactcccaccgccctgctgccactcatactgccagctgattcg
cctcaccctgctccacgcaagcaaatcatcatgggacgcccagggactgtttggaccaac
gtggagcctcgctcggtgccagtgttcccctggcattcgctcgtccctttcctggagccc
agccaatcaggagcggccgcccagcctgccgacggccaacagcttgtcaatcagagcaaa
gagcctcgttgtggcgtcgccctggtgagtgacggacgtgccggccctccagtcctggag
aggggatctccgtcatgccctccgccggccaatgacaatcctcctacagacagaggcggg
gctgacagcgagacagagagtgacacagatgacccgttctccccgggtgtggccaacgat
gcagcgccctcctctggccccatcaagagacgcacacagtccctcagcgccctgcccaag
gacgcagacaggaagagggagaaggaccacatccgccgccccatgaacgccttcatgatc
ttcagtaaacgccaccgggccctggtgcaccagcgacatcccaaccaggacaaccggacg
gtcagcaagatcctgggggagtggtggtacgcgctggggcccaatgagaagcagcagtac
cacgacctggccttccaggtgaaggaggcccacttcagagctcatccagactggaagtgg
tgcaacaaggaccgcaggaagtcactgtccgagggccgcgggaccccgaaggagccgcgg
gagaggagcatgtctgagagcatagatccgctctccgaggcccagacggcggaggggaag
ggagtcggctcgggctggccggggggatcggagcgtcgaggggggctgttcacggggcaa
ccaccccgtcccagggccttttcccagagcgccgtgcacaccctggagcagagcgaggga
gacctggagaaggaggacggggcgagtttgtttcacggccggcgcccgccgccgtccctg
taccacagcagagtcagcgaggacatgaccagcgatgaagagcgcatggtcatctgcgag
gaagagggggatgatgatgtcatggaggattcgtgtgccgaaggctccatcgacctgaag
tgtaaagagagagtaacagacagcgacgaggacgagccagacggacagcatggcttccag
ccagtgtcccgctccgctctcccctcctcctctccctccatccctcccgccgactccacc
tcgtccaaagggaacggagcaggaggcgctgaagatgggtctgagaggaagcgaaagaga
ggcacagacggaggagaggaggggagcgagggaggaaccaagagagaggaaacagcagcc
ggtggaggagagggaggtggagcctcctctctgtccatcacactctctacacccagcacc
cagcctctcgtcactgtggcccagcagggggtgacccaggtcttcggaaccgtccgcatt
gctcccactgtggtgaccaacgtggtgcgacccatagccagcacgcccatccccatcgcc
agcaagccagtggaaggagccatcaccctcagcgccctctcccaagacaagaaagccact
ctccttattggaggaggcggacctcagcagctgccaatcaccgcagggggtgggtacctg
tcctcatcctcccctcctggtcccgtcagtgtaacgcctgtagggggcagcagcctggtc
actagcctagttctgggagggtcatttcctgccgcccacccagtgcaggtcctcgcccca
caacccccgcagccccactcacagacccccctccctgtcctccagccccagctccacccc
accgctgcattctcctccctcacacctccctctggctccaagccgctaacgcaggtccag
tacgtcctgcccaccgagaacccttcctccccacaactcacccagcagcaaatcctctcc
ctgtccaccaatgccgccctggccaatggcgtgcactcaggggcgggagtcagagtcagc
cccgggatcagagtccaaactcagtcaccgggcctgcagagcaagatgttggttcccatg
gaaacagtgagaagagggtctactcctcctcatccttccaccatctccctggtggctccg
cctcttcctgtgcagaacggctccgcgacaggaaacaagatcatccaaattgctcccatg
ccggtggtccagaccaacgttcaccccagtggtgcagcagcagtgcatcctgggaacacc
tttcctgtaaccatggcatcggtggtggctcctggtgcggcgtccccacagaccgtcctc
ctgacctccccccccaccaggatcacctatgtccagtctggcccaggagtcaccacagcg
acaccccaacaggccacgccctctccggggcctgcgtacctgccgtcacctttagcgact
ctgggcttcaccgccatcgcccccagcggccaaaccctggtccagccaatcgttggtcca
gccccgcccctgaactgtcagccacagatcccccccggcccgaccacggcagccgctggt
cgtcaggtactaactgccatctaccctgcaccgactgtcgcactggctaccggcgtggtc
tccgtgaccagtgtgctgcccacactgggagcttccgccgcccaggatgtcacacaccct
gcctctccatcggcagcaggggcgcagggttcggcgtcggccacccctcagccgagcgtg
ggagtggaggtggagctgaaggtggaggtgaagagggagagtccgctggatcctcagctt
gaggagggagggcaggcgatgtcagtggcctcctgtatgagccgtgacgtaacagtgaaa
aaagaggaggacatggagggtctctacatcaaagaggaaatagtgagagacggccaagtc
aaggacagacgaggcgaggcggaggaggagcacgagagaaggatgaaggagagcagtgaa
aagaggagaggccatgagacggacagggaggaccacagcatgggcaacagcagcaaagag
gttgggcctcgttctcctcctccactctcctcaggtctggacccccctccccctccagct
gcagaacgagagcccccctcctcctctaagaagaccaagtttcgacccccgccgctcaaa
aagacacccgactctctggagaaggtcttgtcggagacgtacttcgaggagcgattcgct
gaacttccagagtttaacccagaggaggtccttccctcgcccaccctgcagagtctggcc
acctcgcccagagccatcctgggaagctaccgccgaaagagacgcaactccaccgatctg
gagccggcagcagaggaccccagctccccgcggaggaagacgcgccgtctgtccagctgc
agctcggagcccaacacgccgaagagcgccgccaagtgtgagggagagatcttcaccttc
gacagagcaggcacagagggagaggatcttctaggagactttgagcgggtcccctactcg
tctctgcgcagaactctggatcagcggcgggctctggtcatgcagctgtttaaggaacat
ggcttctttccatcagctcaggccactgctgccttccagggacgctactcagacacgttc
cccaccaaggtgtgtctgcagctgaagatccgcgaggtccgtcagaagatcatgcagacg
gccacgcccgggaccttcgagctcggagggtcggctgacgtcaaccccgccccgtcccac
agctcctctttcaatcaatcagcccgggaggacggcggggcggagcaacagggagacaga
agccggagccccgaggagccaaaaagcgaaggatcgtaa
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integrated database retrieval system
