Hippoglossus stenolepis (Pacific halibut): 118124573
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Entry
118124573 CDS
T08308
Name
(RefSeq) serine/arginine repetitive matrix protein 2-like
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04020
Calcium signaling pathway
hsp04080
Neuroactive ligand-receptor interaction
hsp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
118124573
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
118124573
04082 Neuroactive ligand signaling
118124573
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118124573
Ion channels [BR:
hsp04040
]
Ligand-gated channels
Glutamate (ionotropic)
118124573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
118124573
NCBI-ProteinID:
XP_035038447
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All DBs
Position
17:1690487..1739275
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AA seq
1491 aa
AA seq
DB search
MPVNSSLVVDSAGPMKHCCKGFCIDVLKRLAKIVGFSYDLYLVTNGRHGKNIDGEWNGMV
GEVVSNRADMAIGSLTINEERSEVVEFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAV
WVMMFVMCLSVVAVTVFIFEFFSPVGYNRSLQSAKKSGGSKFTIGKSVWLLWALVFNNSV
PVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQQPTEQY
PPLRFGTVPNGSTEENIRSNYPNMHQYMIRNNQKGVEEAIENLKTGKLDAFIYDAAVLNY
MARKDEGCKVMTIGSGKVFATTGYGIALNKNSRWKRPLDLALLQLVGDDEIDMLERLWLS
GICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKLRHCVKRSGGMDF
LLALSRGMYSCCQFEDETTPGGSKGSLPQYHTVTTMPAGAQQHLVTATINNTTAIAMVQH
QQQQQKHHQQLQQQGQTYTTMLPGSPPTTGHSAMALGPSNSPLLEGPMPCSTFLPRHDRR
LAVVDRWNRPKPEKVMSAGSGGGVGIGGIAGGITELQAQQQYQQNLGQHWSLQGGVAGGA
GAAGDTGLDEYKRYYGPIDPEGLGTNSDQQAGGPQHTPKANPRGPKASGMPRPPLKGPPQ
GPPQGPTHLISKPPPPLPSSPRRPPFWRRGSLAQARRKSSGGPLYENILPLGRRGGGRYG
ASDGAGRRGRRPPPPPPLPVPLSSPTHTPTSPSSPCRVYSSCSSASSSSSSSTSSSSSSS
SSASLSRSNSPSVCSSDSSYNSSLSFRYRAGDRELTVDDDYDSDLLTEESSLLLGSRRKI
RSRRMSSRSLPCSPPPPPIPPRKPRPQRDYGRERTGSQLAQLQEWWASWGDRERARGAIT
VRGEGGVGREEKRQHKERERERKRRKKGRKKKKREDRERERERKRRKAKKKKKKDDKIRK
RERKRSEQEGGDPEKREELKSGTLDYPSYPSLRRESFRKKSESSIRSYGWNIPGDEERRE
EKERDEAEDSRGKEKVLRRRNSKHYQGSSTKPSTSVKFWGGVNPSSDTIPSAFLPLLPVS
SKRRKSKSSDREGVGVEGERRPLLGRDGRSEMPSKEGLSFHEWESDGEDEEEDSEQERRK
AGGRGKRRRGGRTMSDEERERDKVVGIYSDDDGSSGEFGKFERYWEDHEGRAVGGIGGGG
WFFSTYPSRDKVGSINSRDDLFLERGERWGTAEIGWGSSGGGGGGGGGDGGERSWGSGSH
WPPPPLTPPPPRRYWSVDKLHIQDEKKSKRKSKDKGRGRAAYSSCHSPRHHPHPHSSKWA
RVTSRSQEELYRHCQSFGGPLKPKHDSSSSSKPDRSQNPSKSGSQSNLIIQQRTQRADRD
RGRQQSPPPTLLPNLPPPLPALPAPPSSSHPIHAPPPTSSSSVSSPSVVSSTPGALQSSS
MASASAKLQYQRLRSVPQPQRFPQSPHLPLKAKSLCSRRGSAHFSSVESEV
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcaactccagcctggtggtggacagcgccgggcccatgaagcactgctgcaag
ggcttctgcatcgacgtcctgaagcgcctggccaagatcgtgggcttcagctacgacctt
tacctggtgaccaacggccggcatgggaagaacatcgacggggagtggaacggcatggtc
ggagaggtggtgtccaacagggccgacatggccatcggctcgctcaccatcaacgaggag
aggtcggaggtcgtggagttctctgtaccgtttgtggagaccggcatcagcgtcatggtt
tcccggagcaacggcaccgtatcgccgtctgccttcctcgagccctacagcccagcggtg
tgggtgatgatgtttgtgatgtgcctgtcggtggtggctgtcaccgtcttcatcttcgag
ttcttcagccccgtgggatacaaccgcagcctgcagagcgccaagaagtcgggaggatcg
aagttcaccatcgggaagtcggtgtggctgctgtgggcgctggtcttcaacaactctgtg
cctgtggagaatcccagaggaaccaccagcaagatcatggtgctggtctgggctttcttc
gctgtcatcttcctggcgtcctacacggccaacctggctgccttcatgatccaggaggag
tacatcgacacggtgtcaggactgtcagacaagaagttccagcagccgacggagcagtac
ccgcccctgcgcttcggcacggtgccgaacggcagcacggaggagaacatccgctccaac
taccccaacatgcaccagtacatgatccgcaacaaccagaagggagtggaggaggccatc
gaaaacctcaagaccgggaaactggatgccttcatttatgacgccgcagtgctgaactat
atggccaggaaggacgagggctgcaaggtgatgaccatcggctcgggcaaggtgttcgcc
accacaggctacggcatcgcgctgaacaagaactcccgttggaaacgaccactggacctg
gccctgctgcagctggtcggagacgatgagattgatatgttggagcgtctctggctgtcg
gggatctgccacaacgataagatcgaggtgatgagcagtaaactggacatcgacaacatg
gcgggggtcttctacatgctgctcgtggccatgggcctcagcctcttggtgtttgcctgg
gagcatctggtgtactggaagctacggcactgtgtgaagcggtccggtgggatggacttc
ctcctggctctcagcaggggaatgtacagttgctgccagtttgaggatgagaccacacca
ggaggcagcaaaggctctttgccccagtatcacactgtgaccaccatgcctgctggggcc
cagcagcatcttgtgacagccacgataaacaacacgacggccattgctatggtgcagcat
caacaacagcagcagaagcaccaccagcagctgcagcaacaagggcagacctataccacc
atgctccccgggtcacctccaaccacaggacactcagcgatggctctgggcccctcaaac
agccccttattggaaggccccatgccttgctccaccttcttacctcgccatgaccgcaga
cttgctgtcgtggatcgctggaacaggccaaagccggagaaagtaatgagcgcgggcagc
ggtggtggagtgggcattgggggaatagccggtggcatcactgaactccaggcccagcag
cagtatcagcagaatcttgggcagcactggagcttgcaagggggagttgcaggtggagca
ggggcagcaggtgacacagggctagatgaatataagcgctactatggtcctatagatcca
gaggggctagggactaactctgaccaacaggcagggggcccccaacacactcccaaagct
aatccacgaggccccaaagcctcagggatgccacggccgcctcttaaaggccccccacaa
ggccccccacaaggcccaacacacttaatctccaagcctcctccacctctcccatcttct
cctcgaaggcctcccttctggcgacgaggaagcttagctcaggcaagaagaaaaagctca
ggaggtcccctgtatgagaatatcctcccactcgggaggcgaggaggtggcaggtacgga
gcaagtgatggagctggtagaagaggccggcgtcctccacctcctcctccattacctgtc
cccctttcctccccaacacacacccctaccagcccctcctccccatgccgtgtctactcc
tcctgctccagtgcctcgtcctcttcctcttcctccacatcctcctcatcatcttcctca
tcctctgcttctctctcccggtccaattctccctccgtttgctccagtgacagctcctac
aactcctcactgagtttccggtatcgcgcaggtgatcgagagcttacggtggatgacgat
tatgactccgacctgcttacggaggagtccagccttctcctgggctcacggaggaagatt
cgttcacggcgcatgtcatcacgctctttgccgtgcagcccgccacctccgccgatccct
ccacggaagccacgtcctcagcgagattatggcagagagagaactggcagccagctcgcc
caattacaggagtggtgggcatcatggggagacagggagcgagcgaggggagcgataact
gtccggggagaaggaggagtgggaagggaagagaagaggcaacacaaagagagggagcgt
gaaaggaagaggaggaagaagggccgaaagaagaagaagagggaagatagggaaagagaa
agggagcggaagcggcgtaaagcaaagaagaagaagaagaaagatgataaaataaggaag
agagagagaaagaggtctgagcaggagggaggagatcctgaaaaaagagaggaactaaaa
tcagggacactagactacccatcatacccatctctgagaagggagtcctttcggaaaaag
agtgaaagctccatcagaagctatggatggaatatcccaggcgacgaagagagaagggaa
gagaaagagagggatgaagcagaggacagcagaggaaaggaaaaggtcctacggcgaagg
aacagcaagcactaccagggctccagcactaagccttcgacatctgtaaagttctgggga
ggggtcaacccatcctctgacactattccatctgccttcctgcctttgttgcctgtctcc
tctaaaaggaggaagagtaaaagttctgacagggaaggagtaggagtcgaaggggagaga
aggcctctgttgggaagggacgggagaagtgagatgccttccaaagaggggttgtccttt
cacgagtgggagtccgatggagaggatgaggaagaagattctgagcaggagaggaggaaa
gccggggggcgtgggaagcggcgcagaggtggaaggacgatgtccgatgaggagcgggaa
cgtgataaggtcgtcgggatatattctgatgatgatggttcttctggagagtttggaaag
tttgagaggtactgggaggatcatgaaggaagggccgtcggagggatcggagggggaggt
tggttttttagcacctacccctccagggataaagtcggcagcatcaacagcagagatgac
ctgttcctggagcggggagagaggtggggaacagcagagattgggtgggggtccagtggt
ggaggaggaggaggaggaggaggagatggaggtgaaagaagttggggatcgggatcacac
tggccccctcctcctcttaccccaccccctcctcggcgatactggtcagtggataaactc
cacatacaggatgagaagaagagtaaacgcaagtcaaaggacaagggcagagggcgcgca
gcttattcctcctgtcactcaccgcgacatcacccgcacccccactcatccaaatgggcc
cgtgtaacctcaagaagccaggaggagttgtaccgccattgccagagtttcggtggcccc
ctgaagcccaaacacgactcctcctcatcctccaagccagaccgctcacagaatccatct
aagtctggcagtcagtcgaacctcatcatccagcagcggacacagagagcggatagggat
cgaggaaggcaacagtccccgcccccaaccctcttacctaacttgccacccccactccct
gccctcccagctcctccgtcctcatctcacccgatccatgctcctccccctacctcgtcc
tcttctgtatcctccccctccgtggtctcctccaccccgggggcactccagtcctcctcc
atggcttcggcaagtgccaaactgcagtaccagagattgcgctctgtaccccagccccag
aggtttcctcagtctcctcacttaccacttaaagccaagagcctttgctcccgaaggggc
tcggcccatttctccagcgtggagagtgaggtctga
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