Hippoglossus stenolepis (Pacific halibut): 118124579
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Entry
118124579 CDS
T08308
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118124579 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118124579 (cnot3b)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118124579 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118124579 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF402
GrpE
Motif
Other DBs
NCBI-GeneID:
118124579
NCBI-ProteinID:
XP_035038456
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All DBs
Position
17:1440439..1464431
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AA seq
984 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKVRRDCDKLHNAANANQKEKYEADLKKEIK
KLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQK
VDPAQREKEEVGMWLTNMIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFI
EKHRYHIRMLETILRMLDNDSLQVDSIKKIKDDVEYYIDSSQDPDFEENEFLYDDLDLDD
IPQTLVATSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTD
SEVSQSPVKNGNPSCSLSSSSSSSSSSSSSSSSSSSSVSGLNPSSLVSMATIAGGGSSGS
GGNSHYTTSGGLLSNTSAGSYSNATQQPPHPSAQQQPAKNSVSSSSSAPIACPSINSHPA
SSASSPPNASTQGLLTSNSLPPSGPPQTSNSFGLGLGLSLGKGGMSSSLTTSPMSGGLGL
SGMPASLSTMASLLSSSTPAPYAQAAASGAVGSGLPGLPGSLGGVSTTTTNSALGSIGSG
NITVGGPTSSSGGLLGASTSMGSIGSGILGLSSSQSGMQGLSLMSQSPVGGLAPGSGVGI
IGSNGGNSGSMGSGVVGGNSSLSVRPPSRQKQNGSTSYSAVVADSTTDSALNSVSQSQNS
QPSSLISTANQPKDTGPSLLGSITLSSSSPSPGSYSDAKMVSGGSLLNGPLSFSQSSDGM
KCHSSGTLSFLKIPRSEFSCLPLKDSILIDSENSTLFEDNMTMKDEPQEPLSSLKSMAER
AALSSGMEGDVPSLHLTPDIFPSSTTASSGPPSAPQTSLSEVSIPPSLGVCPLGPVPVSK
DQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTE
TLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY
EKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggtgtagaacagtttgaagacatctggcaaaaggtgaggagggactgtgacaagcttcac
aatgcagccaacgccaaccaaaaggagaaatatgaagcagacctcaagaaagagattaaa
aagctacagcgtcttcgagaccagatcaagacgtgggtggcatccaacgagatcaaagat
aaacggcagctagtcgagaatcgcaaactcatagaaacgcaaatggagcggttcaagata
gtggaaagagaaaccaagacgaaagcctactcaaaagaaggactgggtctggcacagaag
gtcgatccggcccagagggaaaaggaggaggtcgggatgtggctaacgaatatgatcgac
acgttgaacatgcaggtggaccagtttgagagtgaagtggagtctctgtcggtccagacc
agaaaaaagaaaggagacaaggagaagcaggaccggatcgaggagctgaagaagttcatt
gagaagcatcgataccacatccggatgctggaaacaatactgaggatgctggacaacgac
tcattgcaggtggactccatcaagaagatcaaggatgatgtggagtactacatagactcg
tcgcaggatcccgattttgaggagaacgagtttctgtacgacgacctggatctggacgac
attcctcagacgctggtcgccacctccccgccgggacactcgcacttggaggacgagatc
ttccagcactccagcagcacacccacctccaccacctcatcttcacccatccccccctcg
cctgccacttgcactacggagaactcagaggatgacaagaagagaggacgttcaacagac
agtgaagttagtcagtcacctgtgaagaacggaaacccctcctgctcgttatcctcttcc
tcctcctcctcctcctcttcctcctcctcttcctcctcctcttcttcctccgtctcagga
ctgaacccctcctcgctggtctctatggcgaccatcgctgggggtggaagcagcggctct
gggggaaacagtcattacaccacctcggggggtctcctctccaacacctccgctggcagc
tacagcaacgccacccagcagccgccgcacccgtcggcacagcagcagccggccaagaac
tcagtgagctcctcctcctctgcacccatagcctgccccagcatcaacagccaccccgcc
tcctccgcctcctctccccccaatgccagcacacaggggctcctgacttcaaactccctg
cctccgtcagggcccccgcagacctccaacagcttcggcctcggcctgggactctctctg
gggaaaggcggcatgtccagctccctcaccaccagcccgatgtccgggggcctcggctta
tcagggatgccggcatccctgagcaccatggcgagccttctatccagctccaccccagca
ccgtacgctcaggcagccgcctcaggcgccgtcggctccggcttaccaggtttaccgggc
tccctgggaggcgtcagcaccacaaccaccaacagcgcattgggctccattggcagtggg
aacatcacagtcggcgggccgacatcttcatcaggaggtctgctgggcgcatcgacatcg
atgggcagcatcggctctgggattctgggtttgagctccagccagtcggggatgcagggg
ttgtctctgatgtcacagagcccggtgggaggcctggctccaggaagcggagtcggcatc
atcgggagcaacgggggtaactcgggatcaatggggagcggagtggtgggaggaaactcg
tcgctctccgtcagaccgccgagccgacagaagcagaacggaagcactagttacagtgct
gtggtagccgacagcacaacagactccgccctcaacagtgtcagccaatcacaaaacagc
caaccctcatctttgatctccacagccaatcagcctaaggatactggtcccagtctactg
ggctctatcactttgtcgtccagctctccatcgccgggctcctacagcgatgccaaaatg
gtgagcggcggcagcctgctgaacggaccgctgtccttctcgcagtcctccgatggcatg
aagtgtcacagctcaggaactctgagctttctgaaaataccaaggtccgagttttcatgt
ctaccactaaaggacagcatcctaatcgattcggaaaactcgaccctgtttgaagacaac
atgaccatgaaagacgagccccaggagcctctgagcagcctgaagtccatggccgagcga
gcagcactcagctcagggatggagggagacgtgccttccctgcacctcaccccagacatc
ttccccagcagcactacagcctcctccggacccccgtctgcgcctcagacctcgctgtca
gaggtcagcatccccccgtcactgggggtctgtccgctggggccggtgcccgtgtccaaa
gaccagctctaccaacaggccatggaggaggcggcgtggacgcacatgccccacccatcg
gactccgagaggatcaggcagtacctgatgaggaacccctgccccaccctgcctttccac
caccaggtgccaccgccccactctgacactgtagagttttaccagaggctttcgaccgag
accctcttcttcatcttttactacctggagggcactaaggcccagtatctggcagccaaa
gccctgaagaagcagtcgtggaggttccacacaaagtacatgatgtggtttcagaggcac
gaagaacccaagaccatcactgatgagtttgagcagggaacgtacatctactttgactat
gagaaatggggccagcggaagaaggagggattcactttcgagtaccggtacctagaagac
cgtgacctccagtga
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