Hippoglossus stenolepis (Pacific halibut): 118124719
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Entry
118124719 CDS
T08308
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118124719 (vps50)
Membrane trafficking [BR:
hsp04131
]
Protein recycling
Others
EARP complex
118124719 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Kgd4-YMR31
Motif
Other DBs
NCBI-GeneID:
118124719
NCBI-ProteinID:
XP_035038667
LinkDB
All DBs
Position
17:12443376..12547076
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AA seq
993 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPVENLRIPSKEELREMREQSIDPQAEQEIINSIEEV
YFSNDSFDMVQHELEKLPPELNLQELEEHRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTALQTNLQLAAVICTNARRQLSVSKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYHRTMQWHEEQDKQEAAPAPDG
AAAAKSDELVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVIS
KLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQCRSPSVSPSKQAASSSTPAQEELSLFQEYLQEGNPFEMHIEEKEEETED
VLASNGYESDELEKSVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSLSRETIRSKKKSDY
NLNKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRN
DMPVPSPSLPTHSGRESGATRVVGPACLYESSGLGLISSRLRTTLNRIQENLIDMEALGE
NAGVHGPAEDRKEKVPSPHLSQLVVLTNSGTLYGLAQRVVATESLVFLAEQFESLQSHLD
TMMPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMSGVKWDIREIMSQ
HNVYVDVLLKEFEEFNKRLGDVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSN
EGRALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQ
LANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctcatggcccggcagggcctgaagagcccccaggagagcatg
gctgacctcagtcctgtggagaacctgaggatccccagcaaggaggagctgcgggagatg
agggaacagtccatcgacccccaggcggagcaggagatcatcaacagcattgaggaggtc
tacttctccaacgactccttcgacatggtgcagcacgaactggagaagctcccacctgag
ctgaacctgcaggagctggaggagcatcgagacaagctgaagagacaacaggcagcagtt
tctaaaaaggtcgcagatctcattctggagaaacagccctcttatgtcaaggagctggag
agagtaaccgcgttacagaccaacctgcagctggcagcagtcatttgcacgaacgcaagg
agacaactgagcgtgtcgaaggaaggattcacagaggccagcctgggtctacttgccaat
cagagaagacgacaactgctgacaggcttgctcaagtctctgaggaccatcaagacactg
caaagaacggatgtaagactcagcgagatgcttgaggaggaagactacccaggtgcaatc
cagctctgtctggaatgtcagaaagctgccagcacctttaaacactacagctgcatcagt
gaattgaattccaaactacaagacaccttggagcaaatagaggagcagcttgatgtcgcc
ctgtcgaagacgtgtaagcacttcgatgtttcgcactacaccaaggtccagctggcctac
acgctcctgggcaagacacagaccgctatggaccagctgcacatgcacttcacccaggcc
atccacaacactgtgttccaagtggtgctgggatacgtggagctgtgtgctggcaacgct
gacaccaagttccagaagatgcaatacaaggacctgtgcacgcacatcaccccggacagc
tacatcccctgcctgacagatctgtgcaaggcattgtgggaggtgatgctgagctaccac
cgcaccatgcagtggcatgaggagcaagacaagcaggaggccgcaccagctccagatggt
gcagcagcagcaaagtctgatgagttggttgtggaccgcagctacgtgaagaagaaactg
gagcacggtctgacacggatctggcaggatgtccagttgaaagtgaaggcctacatcctg
ggcacggacatgtccaacttcaaatatgatgatttcatagtggtactggacgtcatcagc
aagttgatgcaggtgggtgaggagttctgcggcagcaagtccgaggtcctgcaggagtca
atcaaacgccagagcgtcaactacttcaaaaactaccacagggcacgactggaagaacta
aggatgtttctggagaatgagacgtgggaactttgtcctgtcaagtcgaacttcaacatc
gcccagctccatgagtttaagttcatgggccagtgtcgctcgccgtccgtctccccgagc
aaacaggccgcgtcctcgagcacaccggcccaggaagagctgtcactcttccaggagtac
ctccaggaggggaacccgtttgagatgcacatcgaggagaaagaggaggagacagaggat
gtgctggcatccaacggatatgagtcagacgagctggagaagagcgtttaccaggattac
gacagcgacagcgacgtccccgaggagctcaagcaggactacgtggacgagcagacggga
gatgcccctcttaagagcctgtcccgagagaccataagaagcaagaagaagtcagactac
aaccttaataagaccaatgcaccaatcctcaccaacaccaccctcaacgtcatccggctc
gtggggaagtacatgcagatgatgaacattctgaagccgatcgccttcgacgtcatccac
tgtgtgtcacagctcttcgactactacctgtacgccgtatacaccttctttggacgcaat
gacatgcccgtcccaagcccttctttgccaactcacagtggcagagagtcgggtgctacc
agggtggtgggccccgcttgcttgtatgagtcatcgggtctgggccttatcagcagcaga
ctgagaaccacactgaaccggatccaggagaacctcattgacatggaggcactaggggag
aatgcaggcgtccacggcccagcagaagacaggaaagagaaggtgcccagcccccatctc
agccagctggtggtcctcaccaacagtgggactctgtatgggctcgcacagagggtggtg
gccactgagtctctcgtgtttctggctgagcagttcgagtccctccagtcccacctggac
acgatgatgcctgcagccaagaagcctttcctgcaacagttttattcccagacggtttct
acagccagtgaactgcggaaacccatctactggatcgtggcagccaaggccatcgactac
gaacaaatgttgctgttgatgtctggagttaaatgggacatcagggagataatgtcacag
cacaacgtatatgtggacgtccttttaaaggagtttgaggagtttaacaagcggctgggt
gatgtttccagacacgtgcgcatcccgctgcctgtgtccaacgtcctttgggagcactgc
atccgtctggccaacaggactcttgtcgagggctacgctaacgtgaagaagtgtagcaac
gagggccgcgccttaatgcagctggacttccaacagttcctcatgaagctggagaagctg
accgacctgagacccatccccgacaaagagtttgtggagacctacatcaaggcttattac
ctgacggagaacgacatggagcagtttatcaagaatcacagggagtactccatgaagcag
ctcgccaacttggtgaacgtttgcctgggctcacatataaacaagaaagctcgtcagaaa
ctcctggcagccatcgacgacatcgacagacccaagagatag
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