Hippoglossus stenolepis (Pacific halibut): 118124805
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Entry
118124805 CDS
T08308
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118124805
09123 Folding, sorting and degradation
03018 RNA degradation
118124805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118124805
03041 Spliceosome [BR:
hsp03041
]
118124805
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118124805
mRNA cycle factors
Stress granule specific factors
118124805
Spliceosome [BR:
hsp03041
]
Complex C
Other components
Complex C specific factors
118124805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_7
RBD_RDR6
RRM_3
RRM_occluded
HTH_58
Motif
Other DBs
NCBI-GeneID:
118124805
NCBI-ProteinID:
XP_035038846
LinkDB
All DBs
Position
17:complement(9151660..9159369)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGDDMDEESLRELFNKYGNSMSIRVMTDDSGKSRGFGFVSFER
HEDAQKAVDEMNGREMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQQPPPSGYFMAAIPQTQNRA
AYYPAAGQMAQLRPGPRWTTQGVRPQHFQNMPGAMRPSAPRPQSFSTMRPASQVPRMMST
QRVAAQSMGPRPASAAAAAAAPVRGVPQYKYAAGVRNPQQHMTAQQQVAMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPMISNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKETAQKTVTNSAGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagtgctcccagttaccccatggcctcgctgtacgtcggggatctgcatcaa
gatgtgaccgaggccatgctgtacgagaaattcagccccgccggagccatcctctcgatc
cgggtctgcagggacatgatcacccggcgctccctcggatacgcgtatgtgaacttccag
cagccagcggacgcggagcgtgccttggacacaatgaacttcgatgtgatcaaggggcgg
cctgtgcgcatcatgtggtcgcagcgtgatccatcgttgagaaagagtggcgttggaaac
atcttcatcaagaatctcgacaagtccattgacaacaaggctctatatgacaccttctct
gcttttggcaacatcctgtcatgcaaggtggtttgtgatgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaggccgccgaacgagccattgagaaaatgaatggc
atgctgctcaatgaccgaaaagtattcgtcggtcgcttcaaatctcgcaaagaacgcgag
gctgagcttggtgcccgagccaaggagtttacaaacgtctacataaaaaactttggtgac
gatatggatgaggagagcctgagggagctcttcaataaatatggaaattccatgagtatc
cgtgtcatgactgatgacagtggaaaatctcgaggcttcgggttcgtcagctttgagagg
cacgaggacgcccagaaagcggtggatgagatgaacggcagggagatgaacggcaaactg
atctacgtcggccgcgcccagaagaaggtcgagcggcagacggagctgaagcgcaagttt
gagcaaatgaaacaagatcgcatgactcgctaccagggtgtcaacttgtacgtgaagaac
ctcgatgatggactagatgatgaacgcctgcgaaaggagttctcgccatttggcaccata
accagtgcaaaggtgatgatggaaggtgggcgcagcaaaggcttcggctttgtctgcttc
tcgtctccagaggaggccaccaaagctgtgactgaaatgaacggccgcatcgtagccacc
aagccgctgtacgtggccctggcccagcggaaagaggagcgtcaagcccacctgaccaac
cagtacatgcagcgcatggccagcgtgcgggcagttccaaacccagtcatcaatccctac
cagcaacctccgccctctgggtacttcatggcagccatacctcaaacccagaaccgtgcc
gcttactacccagctgctggtcagatggcccagctgcgaccaggcccacgctggaccacc
caaggtgtccggccacagcacttccagaacatgccaggtgccatgcgtccctcagcacca
cggcctcagtccttcagtaccatgcgacctgcctcccaggtgcctcgcatgatgtccacc
cagcgtgtcgcagctcagtctatggggcccagaccagcctctgcagcagctgcagcagcc
gctccggtgcgtggagtccctcagtacaagtacgccgcaggagtccgcaatccccagcag
cacatgactgctcagcaacaagtcgccatgcagcagcctgcagtccacgttcagggacag
gagcctctgactgcctccatgctggctgctgctccaccacaggaacagaagcagatgctg
ggtgagcgtcttttcccaatgatctcgaacatgcatcccagcctggccgggaagatcact
ggcatgctgctggaaatcgacaactccgagctgctccacatgctggagtctccagagtct
ctccgctcgaaggtggatgaggcagtggctgtgcttcaggcccaccaggccaaggagact
gcccagaagactgtgacaaattcagctggtgtcccaagtgtctga
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