Hippoglossus stenolepis (Pacific halibut): 118125352
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Entry
118125352 CDS
T08308
Symbol
tnca
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118125352 (tnca)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118125352 (tnca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118125352 (tnca)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118125352 (tnca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Ig_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Pur_ac_phosph_N
fn3_2
EGF
NDNF_C
hEGF
Motif
Other DBs
NCBI-GeneID:
118125352
NCBI-ProteinID:
XP_035039698
LinkDB
All DBs
Position
18:15828966..15876077
Genome browser
AA seq
2379 aa
AA seq
DB search
MGRRSILGCFLLTVLLSLSTAGLVKKIIRHRRQTLLAPKEHNITLPSADHPVVFNHVYNI
NVPASSLCSVDLDAPESTQLLPKDSPASSGHHITEHTVDGENQIVFTHRINIPRKACGCA
DDLPGLKELMSRLEMLEGEVSVLRDQCNSDRPCCSAQVAGEVGTKPYCNGHGNYSADTCG
CVCEHGWKGPNCTEAECPGNCQDRGRCVDGKCECFKGFSGEDCTLELCPVDCGAYGLCVE
GICVCSDGFFGDDCSQTKCLNNCRGRGRCDKGDCMCDEPWTGLDCSELMCPKDCYDHGRC
VNGTCYCDEGYTGEDCGERNCPNNCQGNGFCVDGRCVCTAGYSGEDCSKLTCLNDCNDRG
TCFNGMCICDVGYQGEDCSQLACLNNCNNRGQCINGQCSCDVGFQGDDCSELSCPRDCLH
RGRCVNGQCVCEEGFAGEDCSIMTCPSNCYGRGECIKGRCACHAGFTGEDCGALSCPNNC
QNRGRCIDGQCVCDEGFTGEDCSQKACPNDCLARGYCVDGKCTCQEGYSGNDCSVLACPD
NCNNRGRCINGKCTCEGGYEGESCTELSCLNNCQDKGRCVNGQCVCDEGFIGEDCFEVSP
PKDLIVGKVTANTVDLTWTNDMLVTEYLVTYVPTSPGGLLQENKVSGDKTSSTVKELEPG
IEYLISVYAVLSNKRSVPVSARVATALPQPEGLKFKSVRETSVEVMWDQLDIPFDGWEIY
FRNTKEENGKVVSTLPSSQNQFLQSGLGPGQEYEVSITIIKNNTKGPQTSKTVTTKIDGP
RQVEVKDVTDSSALVSWSQPVVPMDRVTMFYRPTSDPLDESSAEIFPPDKQYSIDGLRPD
TEYTVMLSSRSGNISSDPVTTNFTTALDAPRNLRAVSQTNSSITLEWTNSRADVGSYRVK
YTPISGATHGEDVFLRGPGDTTKATITGLNPGAEYGIGVTAMKIERESLPATTNAETDID
PPGDFEEVESTETSLTLRWEKPRAKFGRYRLVYVSRDGQVEEVEIPATATSHVVTSLTPG
MGYTLTLTAERGHKRSTPVILSTSTASFTFYLADSDDAELTTPTGSEDNVISFVNLEPSE
SQFSGMEPEDELGTLTVSGITSDGFDLSWRLKAHSLYDSFAVEYKDPQRLWDVKEVHLPG
NATGSKFEGLAASTEYQIKLYGITSSQRSALLEAVAVTAPEPTSPDVLMLSIKDATTTSQ
SSLDNDTIQTPDPLQPVNTEAPSTSDTVVRSSGAESSNLDVLGDLKITNVTSTSVSLAGS
APDEAFDSFMVELSSPSGVTQAHVTTLPGNVRKAEIEGLTPSTHYDVTLQGLVDGNQSLP
LKVVATTEELKPMVLNLTISDITWDSFTASWSPTVGDFDSFVIEVTNLGNFAESQNLSLS
GDAFSLGISGLNPNTSYMVGLYGMYQGSFLEPVYSEATTVNQPVLGTLYISNLTSESFSI
LWNATEGEFDGFILEIIDSDWLMEPKEYNISRNDKSHNVRGLRPSTDYIAYLYGTYKGSR
TSAVSIVASTAEEPDLSRLVVSNITSDRLFLSWRTREKPFDNFIVEVRESASPSQAMGRA
LPGDVHSTVMAGLKASTSYNIKLYASTGGQNTHPLFAVASTEDLPQLGPIAASSVSPHNL
SLSWSTVSGHFDGFVIRVSDSEQQSDPLEFRLPGEIRNITVSNLMDATGYDIELYGISHG
RHTPSVLTHAVTASLPKVENLTISNITPYGFRVSWEVKQQLQQEDSPPSSGGFSHFHIVV
TDSGWLLEPQEFTVPGNQSHLDIWGLITGIGYELRLTGVSESGLLSRPLNTVAVTEAEPE
VEHLFVSDITADSFRLSWAADEDMFDRFGIKIRDSKRLSHPKEYSVRGDERTKVLNGLLS
GTEYEIELYGVTLDQRSQPIIGVAQTGLSTPLGLHFSEVTDSSAVVHWSMSPSPIDNYRI
AYVPFEGGSPMTVTVDGSVFEAVLPNMIPGKTYQVTVSAVKGLEESDPSTDTVTTALDRP
QGLTAVNVTDTSALLLWQPSVATVDGYVITYRADSVSPVVEHVSGNTVEFEMGSLVPGTH
YTVGVHAMKESQKSGSAVTEFVTDVDPPRDLTAINIQTDSATLTWKPPQAAVTGYTLTFS
SADGVIREVVLSPTASSYSMAQLSGSTEYSVKLQAIAGPHRSRHVATVFTTIGQLFRRPR
DCAQIYLNGETTSGLYTIYVGGEEGQPIQVYCDMTTDGGGWTVALRRQNGKLEFFRNWKN
YTAGFGNMNDEFWLGLSNLHKITSSGHYDLRVDLRDKGESAYAQYDKFTLAEPRTRYKIY
IGAYSGTAGDSMTYHQGRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDNS
HSKGINWFHWKGHEHSIEFAEMKIRPANFINFESRKKRS
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaagaagcatcctgggctgcttcctcctgaccgttctgctcagcttatcaacc
gctgggctggttaagaaaatcatacgtcatcgaagacagactttgctagctcctaaagaa
cataacatcaccctccccagcgcagaccatcctgtggttttcaaccatgtctataacatc
aatgttcctgccagttctctgtgctcagtggacctggacgccccggagagcacacagctt
cttcccaaggattcgccagcttcgtcagggcatcacatcactgagcacactgtcgacggg
gagaaccagatcgtgttcacccaccgcatcaatatacctcggaaggcctgcggctgcgct
gacgacctgcccggcctgaaagagctcatgagccgcctggagatgcttgagggagaagtt
tcagttttgagggatcagtgcaacagcgacaggccctgctgcagtgcacaggtcgcaggt
gaagtaggaacaaaaccttactgcaacggccatggaaactacagcgctgacacttgtggc
tgtgtatgtgagcatggctggaagggacccaactgcactgaggccgagtgtcccggtaac
tgccaggaccggggccgctgcgtggacggaaagtgtgagtgcttcaagggcttctctgga
gaggactgcacgctcgaactctgccctgtggactgtggagcttatggcctgtgtgtggaa
ggcatttgcgtttgctcagatggtttcttcggtgacgactgctctcagaccaagtgcctc
aacaactgcagaggccgcggccgctgtgataagggagactgcatgtgtgacgaaccttgg
actggccttgactgctctgagctcatgtgtcccaaagactgctacgaccacgggcgctgt
gtgaacggtacctgctactgtgatgagggctacaccggggaggactgtggagaacgcaat
tgtcctaacaactgccaaggtaacggtttctgtgttgatggtcgatgtgtctgcactgcc
ggctacagcggagaggactgctctaaactcacctgcctcaacgactgtaacgacagaggg
acgtgcttcaacgggatgtgtatctgcgacgtaggctaccaaggagaagactgcagccag
ttagcatgtctgaacaactgtaacaacagaggccagtgcataaatggacagtgttcatgc
gatgttggtttccagggagatgattgctctgagctctcctgtcccagagactgcctgcac
agagggcgctgcgttaacggccagtgtgtgtgcgaagaaggcttcgccggcgaggactgc
agcatcatgacctgcccctcaaactgctacggccgcggcgagtgcatcaaaggacgctgc
gcctgtcatgcaggcttcactggcgaggactgcggtgcactgagctgccctaacaactgc
cagaaccgtggccgctgcatcgatgggcagtgcgtttgtgacgaaggcttcactggagaa
gactgcagtcagaaagcttgtcccaacgactgcctggccagaggatactgcgtcgacggc
aagtgcacgtgtcaggaggggtactctggaaatgactgctctgtgctcgcctgtccagat
aactgcaacaacagagggcgctgcatcaacgggaagtgcacatgtgagggtggatatgaa
ggagagagctgtacagagctcagctgcctcaacaactgccaggacaaaggccgctgtgtg
aacggtcagtgcgtctgtgatgagggattcatcggagaggactgctttgaagtgtctcct
ccaaaggaccttattgtcggcaaggtcaccgctaacacagtggacctgacctggaccaat
gacatgttggtgacagaataccttgtgacgtatgtacccaccagtcccgggggtcttctc
caggagaacaaagtgtctggggacaaaacttcctccactgtcaaagagcttgaacctggc
attgagtatctgatcagtgtctatgctgtcctgagcaacaagaggagtgtccctgtcagc
gccagggtggccacagctctcccacagccagagggtttaaaattcaaatcagtgagagag
acctcagtagaagtaatgtgggaccagctggacatcccctttgatggctgggagatctat
ttccgcaacacgaaagaagaaaatggaaaagtggtgagcacccttccatcctctcaaaac
cagtttctccagtcaggcttgggaccaggacaagagtatgaagtctccatcaccatcatc
aagaataacacgaaaggaccccaaacatccaaaacagtcactaccaagattgacggccct
cggcaggtggaggtgaaggatgtcacggactcctcggcactggtgagctggtctcagcca
gttgttcctatggacagagtcaccatgttttacaggcccacctccgaccccttagacgaa
agcagtgcagagattttccccccagacaagcaatacagcatcgatggtctgagaccagac
actgagtacacagtgatgctctcctccaggagtggaaacatcagcagtgaccctgtcacc
accaatttcactacagccctggatgccccaaggaacctgcgggccgtgtctcagacgaac
agcagcatcactctggagtggactaacagtcgggctgatgtcggcagctatagggtgaag
tacaccccgatctctggagcaactcacggtgaggacgtgttcctgcgaggaccaggagac
accacaaaagctacaatcactgggctgaatccaggggcggagtatggaatcggtgttact
gccatgaagatagagagagagagcctcccggcgactacaaatgcagaaactgacatcgat
cctccaggagattttgaagaagttgagtccacagagacctccctcactttgaggtgggag
aaacctagagccaagttcggtcgctacaggctggtatacgtctccagagatggccaggtc
gaggaggtggagatcccggccactgcaacgagccatgtcgtgaccagcctgactcctgga
atgggctatactctcacgttgactgcagagaggggacacaagagaagcacgcctgtcatc
ctgtctacatccacagcctctttcacattttatttagccgactcagacgacgctgagcta
acaactcctacaggctcggaggacaatgtgattagctttgtgaatttagagccctctgag
tcccagttctctgggatggagcctgaggatgagctcggaacgctgactgtttcaggcatc
acgtctgatggatttgacctctcatggagactaaaggctcacagcctttatgatagcttt
gcagtagaatataaagaccctcagcgattatgggatgtgaaagaggtccatcttcctgga
aatgccactggctctaaatttgaaggcctggcggcatcgacagagtatcagataaaactt
tatggaataaccagtagccagagatctgcgctacttgaagctgtcgcagtcacagcaccc
gagcctacctccccagatgtacttatgctgagtattaaagatgccacaacaacctcacag
tcttctctggataatgacacaattcaaaccccagatcccctccaacccgtaaacactgag
gctccttccacctctgatactgttgtgaggagctcaggggctgaaagctcaaacctggat
gtacttggggacctcaaaatcacaaatgttacctccactagtgtaagcttggctgggtcg
gcgcccgacgaggcgttcgacagctttatggtggagctcagttctccatcaggggtgaca
caagctcatgtgaccacattaccgggaaatgtgaggaaggctgaaatagagggtttgacc
ccctcgacacattatgatgttacattacaagggctggtggatgggaatcaatctttgcct
ctcaaagttgtcgctactacagaggagctgaagcccatggtgttgaacctcaccatctct
gacattacatgggacagcttcactgcgtcctggagccccacagttggggactttgacagc
tttgtcattgaggtaacaaacttggggaatttcgcagagagccagaacctctcactgtct
ggagacgctttcagcctgggcatctccgggctgaatcccaacaccagctacatggttggc
ctgtacgggatgtatcagggctccttccttgagcctgtgtacagtgaagccactacagtg
aatcagccggtgcttggcacactatatatctcaaacttaacgtcagagagcttttctatc
ctgtggaacgccactgaaggagagtttgatggttttatcctggagataattgattctgat
tggctgatggagccaaaggaatataacatatcccgcaatgataagtcacacaatgtcaga
gggctcaggcccagcactgattacatagcctacctctatgggacgtacaagggatcccga
accagtgctgtcagtattgttgcatcaacagctgaagagcctgatttgtccaggctagtt
gtttctaacattacctcagacagattgtttctgtcgtggcggacaagagagaagcctttt
gataactttatagtagaagtcagagagtctgcttcgccctctcaggcaatggggcgcgct
ctgccaggagacgtgcactccacagtcatggccgggctcaaagcaagcacaagctacaac
ataaagctgtacgctagcactggtggccagaacacacatcctctatttgctgtagcttca
acagaggatctcccacagttggggcccatagctgcttcatctgtgagtccacataatctc
agcttgtcctggagcactgtgtcaggccattttgatggctttgttatccgggtcagtgac
tccgagcagcagtctgatccactggagttcagactgcctggtgaaatccgtaacattaca
gtctcgaacctgatggatgccacaggctatgacattgaactgtatggtatttctcacggg
cgccacactccctctgtgttaacccacgccgtcacagcttctttgcctaaagtggaaaac
ttgaccatttccaacataaccccctacggcttccgtgtgtcgtgggaggtgaagcagcag
ctgcagcaggaggattcacccccctctagtgggggcttcagccactttcacatagtggtg
acagactccgggtggctgctggagcctcaggagttcactgtgcctggaaaccagagtcac
ctggacatctggggcctcatcaccggcataggatatgagctcaggctgacgggggtgtca
gagtcagggcttctctctcggcctctgaatacagtggctgtgacagaggctgagccggag
gtggagcatctctttgtctctgacatcactgctgacagcttccgtctgtcgtgggcggca
gatgaagacatgtttgacagatttgggattaaaataagagacagcaaaaggctatcccat
cctaaggagtacagtgtccgcggtgacgagcgaaccaaggttttaaatggactcttgagt
ggcactgagtatgaaatcgagctttatggtgtcacattggaccaacgctcccaacctatt
attggggttgctcagacaggcctgagcacaccactgggacttcatttctctgaagtgacg
gattcttctgccgtagttcactggtccatgtctccctctcctattgataactaccgcatc
gcctatgtgccctttgaaggaggaagcccgatgacagtgactgtggacggcagtgtgttt
gaggctgtgctgcccaacatgatccctggcaaaacctaccaagtgactgtcagtgctgtg
aaaggtctggaggaaagcgaccccagcaccgacactgtaaccacagctctggacagacct
cagggcctgactgcagttaatgtcactgacacatcagccctgctgctgtggcaaccgtct
gtggccacagtcgatggctacgtcatcacctacagggcagattcagtgtccccggtggtg
gagcatgtttctggaaacaccgtggagtttgagatgggctccttagttcctggaacccac
tacacagttggagttcatgccatgaaagaatctcagaagagtggatctgcagttactgaa
ttcgtcacagatgtggaccctcctcgtgatctgacagctataaacatccaaactgacagt
gctactctgacatggaaacctccgcaggctgctgtgaccggttacacactcaccttctct
tctgctgatggtgtgatcagggaagtggtgctgagcccgacagcttcctcttacagcatg
gctcagctcagtggttccacagagtacagtgtcaaactgcaggccatcgctgggccccac
aggagtcgacatgtagccactgtcttcacgaccattggacagttgttcagacgacccagg
gactgtgctcagatatatctgaatggagagacgacctctggtctatacaccatctatgtg
ggaggagaggagggccagcccatccaggtttactgtgacatgaccacagatggcggagga
tggacggttgccctcagacgccagaatggaaagctggagttcttcaggaactggaagaac
tacaccgctggctttggtaacatgaatgatgagttctggctgggtctctccaaccttcat
aaaatcacatcctctggtcattatgacctgcgagtggacttgagggacaaaggggaatca
gcctacgcccagtatgacaagttcacgcttgcagaaccaagaacacgttataaaatctac
ataggggcatacagtggaacagcaggtgactccatgacttaccaccagggtcgaccgttc
tctacctatgacaacgacaacgatatcgctgtcaccaactgcgccttgtcctacaaaggt
gccttttggtataaaaactgtcatcgcgtcaacctcatggggaaatacggcgacaacagt
cacagtaaggggatcaactggttccactggaaaggccacgaacactcaattgaatttgcg
gagatgaagatcagaccagccaacttcataaactttgagagcagaaaaaaacgatcatag
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integrated database retrieval system
