Hippoglossus stenolepis (Pacific halibut): 118125409
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Entry
118125409 CDS
T08308
Symbol
pcdh7a
Name
(RefSeq) protocadherin-7
KO
K16498
protocadherin delta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118125409 (pcdh7a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118125409 (pcdh7a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118125409 (pcdh7a)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118125409 (pcdh7a)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118125409 (pcdh7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
118125409
NCBI-ProteinID:
XP_035039825
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All DBs
Position
2:16531670..16576127
Genome browser
AA seq
1367 aa
AA seq
DB search
MQRLGAVHSSAAQALSLVVLVLQLLTQPPGADSALRYRVAEEGPPDVKIGNVAADLGLNA
GTGNGDVTFALESGSEFFKIDNVTGELTTSPRRIDREKLPQCQMIFDENECFLDFEVSVI
GPLQSWVDLFEGRVVITDINDNTPSFPSPVLQLSVEENRPIGTLYLLPTATDRDFGRNGI
DRYELIQDGGAGSSSARRTAGGNPNTRVEGLGDRRGRSGDSGGARSSVFELQVADIPDGE
KQPQLIVKGTLDRELKDSYELILRVRDGGNPPRSSQALLRVSITDVNDNSPQFERSTYEA
EMAENAPPGTPVLQVRASDRDIGVNGQVEYVFGAATESVRRLLRLDEATGWLSVLHRIDR
EEVAQLRFTVTARDRGQPPRTDRTTVVLAVRDENDNVPIVEIRKIGRIPVRDGAALVPEN
VLVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGETALPPLPADEAFDRNKKKYF
LHTSALLDYEVTKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHPPIFAQNVMEVHFAE
NNSPGERVVTVVATDADSGKNAEIVYSLDSAANGPFYIDADNGDIRASGVLDREQRERYE
LRVIAKDKGTPPLQGSATVVVQVTDRNDNAPKFVQEIFTFYVKENLLANSPVGMVTVTDA
DEGDNAELSLFVEMDGADEKNEGEDGEKEQGEEVFSIENNTGTIFSSASFDREKLSTYTF
RVRAVDGGEPRKTATATVSLFVTDENDNAPSITSPANESYTLLPPASSARTVVRTVMAID
SDTGPNADLHYALVGGNPFRLFEIGHTNGVITLAEPLERRHRGLHRLVVRVNDSGAPSLC
AIALVHVFINESVANATLVEAQVARSLMAPLLLDIAGDPDSERSLGKQRLSVAIGVLAGA
AAVILVILLVVTARQCGAQGKNGYEAGKKEPEEDFFSPPGAQPHAGRGGGSDRGRKPRRD
KRNGSGGSAVVGGGKSDRSLYSGIVTVNGLRRHANDDDEEDLSSASERLAARYCSMDGDP
GSPRMSGGMRHQSSPDLARHYKSSSPLPAVNLQPHSPPAEGKKHQAVQELPPSNTFVGSG
GCVGSAGSSSSSSGGSGNADAMSLGSDQCSEYGCQTGNKYSKQGTLRRVTFSVVSQPQDG
GCYDSGLEDSETPSSKSSSGPRLGALPLPEEGYERTTPEGSVGEEEHLENDARQLPDVAL
TGKCTRECDEFGHSDTCWMPVRPSPRQRHGSDPPRLSTFAPGDDNNNLRGHDHESDSESA
GSAGSSEPGMVVGGEGQRLPIANGDPLGTLGGGDRNRNMGDHNRNLLNRKMTSASYDTFS
SAGFGRRQPEEEGREGQNQPEVIPLTRTGGDYKTTSCLTLSRREVYL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcttggtgcagtgcactcctccgcggcgcaggctctcagcctcgtggtttta
gtgctgcagctgctgactcagccaccgggtgccgactcagctctccggtaccgggtggcg
gaggagggcccgcctgacgtcaagatcggcaacgtggccgcagacctgggcctcaatgca
ggcacgggcaacggggatgtcaccttcgccctggagagcggctcggagttcttcaagatt
gacaacgtgacaggtgagctgacaacaagcccacggcgcattgacagggagaagcttcca
caatgccagatgatatttgacgaaaacgagtgtttcttggacttcgaggtgtcagtgata
gggccactgcagagctgggtggacctgttcgaaggccgtgtggtcataacagacatcaat
gacaacacaccttcattcccctcacctgtgctccagctctcagttgaagaaaaccgccca
ataggaaccctttacctgctgcccactgcaacagacagggactttgggcgcaatggcatt
gaccggtatgagttgatccaagatggtggtgctgggtcaagttcagcaaggcgcacagca
ggaggaaacccgaatactagagtagagggacttggggaccggaggggaagaagtggagac
agtggaggagccaggagcagtgtgtttgaattacaagttgcagacataccagatggtgaa
aaacaaccacagctcatcgtgaaaggtacgttggaccgtgagctgaaagactcatatgaa
ctcatcctcagggttcgagatggagggaacccgccacgttcctcccaagccctgcttcgt
gtttccatcactgatgtgaatgacaacagcccacagtttgagaggtccacatatgaggcc
gagatggcagaaaatgctcctccaggtacacctgtgctccaggtcagagcttcagaccgt
gacattggagtcaacgggcaggtggagtatgtctttggagctgccaccgaatctgtcagg
cgactcctgcggctggacgaggcgaccgggtggctgagcgtcctccacaggatcgacaga
gaggaggtggctcaactgaggttcacagtaacagccagggataggggtcagcctccccgc
actgaccgaaccactgtagttctggctgtccgagatgaaaacgacaacgtcccaatcgta
gagatccgcaagatcggtcggattcccgttcgagatggtgcagcattagtgcctgaaaat
gttctggtggacacaccagtagctttggtacaagtgtcagaccgagaccagggagagaat
ggggctgtgacatgcacagtggttggagacgttccgttcacactgaagccagctggtgaa
acagcactcccaccgctacctgcagatgaagcctttgacaggaacaagaaaaaatacttc
ttgcatacttctgccttgctggactacgaggtcaccaaagagtacagtgttactattgtg
gcagtagattctggaagccccagtctgtccagtaacagctcgctgatggtgcgagtggta
gatatcaacgaccatcccccaatctttgcccagaatgtcatggaggttcactttgcagag
aacaactcaccgggcgagagggtagtgactgtggtagctacagatgcagacagtggcaag
aatgcagagattgtgtactccttggactctgctgccaatgggccattttacatagatgca
gataatggagatatccgcgcctctggggttctggaccgtgagcagcgagagaggtacgag
ctccgggttattgccaaggacaagggcaccccccctctgcaaggttctgccactgttgtt
gttcaggttactgacagaaatgacaatgcaccaaagtttgttcaggaaatcttcacgttc
tacgtcaaagagaacctgcttgccaacagcccagttggcatggtcactgtgacggatgct
gatgaaggagacaatgcagagctcagtctgtttgtagagatggatggagctgatgagaag
aatgagggagaggatggagagaaagaacaaggtgaagaagtgttttccattgagaacaac
acagggactatcttctcttctgcatcgtttgatcgtgaaaagctttccacctacaccttc
cgtgtccgggccgtggacggaggcgagccacgcaaaactgccactgccaccgtctcactc
tttgtgacagatgaaaatgacaacgccccctcaatcacctctccagccaacgagtcctac
acccttcttcctcctgccagcagtgcccgcaccgtagtccggactgtaatggccatcgac
tcagacacaggcccaaacgcggaccttcactacgctctagtggggggaaatcccttcaga
ctctttgagatcggtcacaccaatggtgtgatcaccctggcagaacccctggagcggcgc
cacagaggtctgcatcgcctggtggtccgggtcaacgatagtggggccccatctctctgt
gccattgccctggtccatgtctttattaacgaaagcgtggccaacgctaccctggtggag
gcacaggtggcccgaagcctgatggctccgctgttgctggacattgcaggggaccctgac
agtgagcgttctctagggaagcagcgcctcagcgtagccattggtgtcctggccggagcc
gcggccgtcatcttagtgattctcctcgttgtcacagctcggcaatgcggggctcagggg
aagaatggctacgaggcaggtaagaaggagccagaggaggacttcttcagtcctccaggg
gctcaacctcatgccggccgtggaggaggatcagaccgtggacgcaaacctcgacgtgac
aaacgtaacggaagcggcggtagtgctgttgtgggaggagggaaatcggacagatcactc
tacagcggtatcgtcacagtcaacggattgcgtcgccatgccaacgatgatgatgaggag
gatttgagtagcgctagcgagcgcctggcggcccgctactgttctatggatggtgaccct
ggcagcccgcggatgagtggcggcatgcgacaccagtcaagcccagatctcgcccggcac
tacaaatccagctcacctctccctgcggtgaacctgcagccccactcccccccagctgaa
ggaaagaagcaccaggccgtccaggagctgcctccatccaacacctttgtgggcagcgga
ggttgcgtggggagcgctggctccagcagcagcagcagtgggggcagcggcaatgcagat
gcaatgtccctgggatctgaccagtgctcagagtatggctgccagactgggaacaagtac
agcaaacaggggacccttcgacgggtgaccttctcggtagtcagccaaccccaggacggc
ggttgctatgacagtggcctggaggactcagagacgccgagcagcaagagttcgtctggg
ccgcgactgggtgccctgccgctgccggaggaaggctatgagcggaccacgccggagggc
agtgtgggagaggaggagcacctggaaaatgatgccagacagctgccagacgtagctctg
acaggaaagtgcaccagggagtgtgatgaattcggccactctgacacttgttggatgccc
gtccgtccctcaccacgccagcgtcacggcagcgaccccccacggctctccaccttcgcc
ccgggagatgataacaacaatctccgtggccacgatcatgagagtgacagcgagagtgcc
ggcagcgcagggagctcggaacccggcatggtcgtcggtggagaaggtcagagattaccc
atagccaatggggatcccctcggcaccctgggtggtggagaccgcaacaggaacatgggc
gatcacaaccgtaaccttctgaaccgcaagatgacttcggcatcctacgacacatttagt
agcgcaggctttgggaggcgccagccagaggaggaaggaagagaaggccagaaccaaccc
gaggtgataccactgacgaggacaggaggtgactacaagaccacatcctgtctcacactg
tcacgccgggaggtctacctgtga
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