Hippoglossus stenolepis (Pacific halibut): 118125410
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Entry
118125410 CDS
T08308
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118125410 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118125410 (nup188)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118125410 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
118125410
NCBI-ProteinID:
XP_035039824
LinkDB
All DBs
Position
18:complement(13865282..13880958)
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AA seq
1745 aa
AA seq
DB search
MAESELTVRSCRELWTILLGRSALRETAQIDAELDRHRDRLHQGLRYYKPPSSSSAGKVK
DNKEVAQPLKDFGLRISKLLALDEQQSVQLLQCYLQEDYRGTRDSLKVVLKDERQSQALL
LKIADYYYEERMCLLRCVLLLLTYFQDERHPYRAEYSNCVNKLEKDLVSNYQSQFESLFK
AEAPTWETHGNLMTERQVSRWFLQCLREQSLLLEIIFLYYAYFEMRPSDLLSFTKMFKEQ
GFGLRQTNRHLVDKSMDSLVDRIGYLSSLILVEGMDIDFLHKCALEDSTEQHQFFSAPDV
IKEMSQLLMTFGDIPHHGPVLLAWVLLRHTLRPDESSPVIRRIGNTALQLGVFKYLSTML
KGLVLSGNNCTASTAKMCIYGLLSFVITSFEEESLQTDGVATQCSHLIDAACEVLSAPNL
PEVFWEMKPNMGLGMILDSAVGMFPHKIGPLLQLLTALVSNKLTVKKVYNFLDKMSFFTQ
VYKHKPNDIISKDDETLWRRQTPKLLYPLGSGQANLWLPQGVLGQVMIAGEQGYVVRWDH
SYSSWTLFTCEVEMLLHVVSTADVIAHCVRVKPILDLVHKIISTDWTVSDCLLPLTSRIY
MLLQRLTSVINPPVDVIASCVNCLSVLAARMPGKVWSSLHHTGFLPFASNPLTTMAQCVS
AEGMKAGNYGNLLVQIEQPRGEYSVTIAFLRLITTLVKGQLGSTQNKGLIPCVLLVLKEM
LPTYHKWRYNTYGVREKIGCLILELIHAILNLSPEGEDQGSTPTLQSLCIYCLANTEAGQ
AVVNIMGVGVDTIDLVLAAQPSSCGSEGPGQTLIQTVKLAFSVTNNVIRLKPLSDVVSPL
EQALTQHGGHGNNLIVVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAI
RDAFLTRLQSKTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSEGSKEFLLGEWS
CLHVVLDLIDSKQQGKYWCPPLLHRAALAFLLALWQDRRDSAISVLRAKERFWENLTTPL
FATLTPPSDTTEPCVLETCAFVMKIIGLEIYYVVSGSLEQSLKDGLQKFSNARRYEYWSQ
YVKSLVCHVAEMEEEGICSFQETQMLISAWRMLLILSTSHSDVMQLTEDSTKLKLFMDVL
DGTKAALTTRTSGPCLNLGSMMTTLLLILLKQWRGVVATAPDILSPLSLILESVQANQQI
MERTKAKIFSALISVLQIQGLNGGDISQLPQLLLSVCETVKDEALALIDNTRHMSQAADT
MEDEDSMETESARGPQKDQRDGVCVLALHLAKELCRTDEDGEHWVSVMRNIPVLPSVLSA
VELSLRSKHNLYFTEAALHLLLTLARTPQGAAAVAAAGVIQTICLPLLSVYEVSSNEASQ
SFSRKSQDSACWPGVYRLCMSLMESLLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQ
SLSCLDEADHTVGFLLQLSSFCKEWQFHLPKLLRDIQVNLCYLCQTCTYLLHSKKMLHHY
LQAKNGEALPPAPLRRTQRPPQTPSKEAAGGGEREEAEQKALLAVQCSLLKILSKTLATL
QHFTPDCCQILMDQCMDLAEYRTLFVLSFTTPAFDPDVAPSFGTLLATINVALSMLSEIE
KKKEPVSLSIASLASSEEIQALKSLLMFTMENCFYVLISQAVRCLKDPSILPRDKQRLKQ
ELSSELSTLLSSLSRHFRRGSPSSPASGILPSTQSKPPTPGSKGSHEGQEPFIQLVQAFV
RLVQR
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcggagctgaccgttaggagctgtcgagaattatggaccatcctgctggga
agatctgcgttacgagagacggctcagatagatgcagagctggacagacacagagacaga
ctgcatcaaggtctccgttactacaaaccacccagttcatcctccgctgggaaagtgaag
gacaacaaagaagttgcacagccactaaaggattttggtttgaggatcagtaaactgttg
gctcttgatgagcagcagagtgtgcagcttttacagtgctacctacaggaggattacaga
ggaacccgggattcgttaaaggttgttctcaaggatgagcgacaaagccaagcactgcta
ctgaagatagctgactattactatgaggagcgcatgtgtctgctcagatgtgtcctcctc
ttgctgacatactttcaggatgaacgacatccgtacagggctgagtactctaactgtgtc
aataagctggaaaaagaccttgtgagcaactaccagtcacagtttgagagcctcttcaaa
gcagaagcaccaacatgggaaactcatggaaatctcatgacggagaggcaggtttcacgg
tggttcctgcagtgtctgagagaacagtctctgctgctggagatcatattcctgtattat
gcttactttgagatgagaccgtccgacctgctgagcttcacaaagatgttcaaggagcag
gggtttggtttgcggcagaccaacagacacctagtagacaaaagcatggactcattggtt
gaccgcattggatatctgagctctctcatcctggttgaaggaatggacatagactttctg
cacaagtgtgccctagaagactctacagagcagcatcagttcttcagtgctccagacgtc
atcaaggagatgagtcagttgctgatgacattcggtgacatccctcatcatgggccagtg
ctgctcgcttgggtcctgctgagacacacattgagaccggacgagtccagccccgtgatc
aggaggataggcaacactgctctgcagctgggggtgttcaagtacctttcaaccatgttg
aaaggccttgtactctcaggaaataattgcacggcaagcacagcaaagatgtgtatctac
ggactcctctcatttgtgatcacttctttcgaagaagaaagcttacagactgacggtgtg
gcgacgcagtgctcccacctgatcgatgctgcttgtgaagtcctttctgctcccaatctg
cccgaagtcttttgggaaatgaaaccaaacatgggattgggaatgatcctggacagtgcg
gttgggatgttccctcataagattggaccactgttacaacttctgactgcgcttgtgtca
aacaagttgacagttaaaaaggtgtacaactttttggataagatgtccttcttcacacaa
gtttacaaacataagcccaatgacatcatctccaaggatgatgagacgttgtggaggaga
caaacgccaaagctcctctatcctctcggatcagggcaggctaatctgtggttgccacag
ggagtgctaggccaggtgatgatagcaggtgaacagggctatgtggtgcgctgggaccac
tcatacagctcctggactctcttcacgtgtgaggtggagatgctgctccatgtagtttcc
acagcagatgttatagctcactgtgtacgtgtgaaacccatcctggatctggttcacaag
atcatcagcacagactggactgtgtcggactgtctgctgcctctcacttcacgaatctac
atgctgctgcagaggttaacatcagtcatcaaccctccagtggacgttattgcctcctgt
gtgaactgcctctctgttctggctgcaaggatgcctgggaaagtgtggtccagtctgcac
cacactggcttcctcccctttgcctccaaccctttgaccaccatggctcagtgtgtgagt
gctgaggggatgaaggcaggtaactatggcaacctgctggtccagattgaacagcccagg
ggggagtattctgtgaccatcgccttccttcgtctcattacaaccctggtcaagggtcag
cttggcagcactcagaacaaaggcctgatcccatgtgtgttgctggtgctgaaggagatg
ttgcctacgtaccataagtggcgttacaacacctacggagtcagggagaagataggttgt
cttattttggagctgattcacgctattctcaatctgagcccagagggagaagatcagggc
agcacccccaccctgcagtctctgtgcatctactgcctggcaaacactgaggctggacag
gctgtcgtcaatatcatgggagttggagtggacacaatagatttggtcctggctgcacag
cccagcagctgtggctctgagggtcctggtcagaccctgatccagacggtcaagttggcc
ttctctgtcacaaacaacgtcatccgcctgaagccgctgtccgatgttgtgtccccgctg
gagcaggctctgacacagcacggtggtcacggcaacaacctcattgttgttctggccaag
tatatttaccacaaacatgatccggcgctgcctcgccttgcaatccagttgctcaaaaga
cttgccacagtggctcccatgtcagtctacgcctgccttggaagcgatgcagcagccatt
cgagatgcgttcctcactcggctgcagagcaaaacagaagacatgaggatcaaggtcatg
atccttgaatttcttactgttgctgtagaaactcagcccggcctcatcgagctgttcctc
aacctggaagtcaaagatggcagcgagggctcaaaggagtttcttcttggtgagtggagc
tgtcttcatgtagtgttggacctgattgactccaaacaacaggggaaatattggtgtcct
cctctgctccaccgagctgccctggccttccttctcgccctctggcaggatcgcagagac
agtgccatctccgtcttacgcgccaaagaacgtttttgggagaatctgacgacacctctc
tttgcaaccctcaccccaccttcagataccacagagccttgtgttctggagacatgtgct
tttgtcatgaaaatcatcggcctggagatctactatgttgtcagtggctcattagagcag
tctctgaaggatgggctgcagaagttctccaacgcacgaagatatgagtactggtcccag
tatgtcaagtctctggtgtgtcacgttgctgagatggaagaagaaggaatctgttctttt
caagagacccagatgttgatctctgcctggaggatgctgttgattctttccaccagccat
tctgatgtgatgcagctcacagaagactccaccaagctgaaactgttcatggacgtcctg
gatgggacgaaagcggctctgacgacccgcacgtctgggccttgtcttaatcttgggtcc
atgatgaccacgctactgctcatcctcctcaagcagtggagaggtgtggtagcaacggct
cctgacatcctgtctcccctctccttgatcctggagagcgtccaagctaaccagcagata
atggagaggaccaaagctaaaatcttctctgcactaatttctgtgctgcagattcaggga
ctcaacggtggagatatttcccagctgccccagctgttgctgtcagtgtgtgagacggtg
aaagacgaggcgctggcgctcattgacaacactcgccacatgagccaggcagcagacaca
atggaggacgaggacagcatggagaccgagtctgcccgcggcccacagaaggaccaaaga
gacggggtgtgtgtgctggcgctgcacttggcgaaggagctgtgtcgcaccgatgaggat
ggcgagcactgggtgtccgtgatgaggaatattccagtccttccctcagttctcagcgct
gtcgagctcagcctacgctccaaacacaacctctacttcactgaggctgctcttcatctg
ctgctcacactggcccgcactccgcagggagcagcagctgttgctgcagcaggagtcatc
caaaccatctgcctccctcttctgagcgtatacgaggtctcttccaatgaagcatcacag
agcttctcccgcaagtcccaggactccgcctgctggccgggtgtgtaccgcctgtgcatg
tctttaatggagagtctgctcaagactctgcgctacaacttcatcaatgaagccctggac
tttgttggagtgcatcaagaacgcattctacagtgtctgaacgcagtgcgaacagtgcag
agtctgtcgtgtttggacgaggccgaccacacagtcggcttcctgctgcagctctccagc
ttctgcaaggagtggcagttccacctccccaaactgctgcgggacatccaggttaacctg
tgttatctgtgtcagacctgcacgtatctgctccacagcaagaagatgcttcatcactac
ctccaggctaaaaacggtgaggctttgccccctgctcccctccgcaggacgcagcgcccc
ccacagaccccgtctaaagaggcagcgggcggaggagagagggaggaggcagagcagaaa
gccctgctggccgtgcagtgcagtttactgaagatcctcagcaaaacgctggccaccctg
cagcacttcactccagactgctgccagatcctcatggaccagtgtatggacttggccgag
tacaggaccctgtttgttctcagcttcacgactccggcgtttgaccctgatgtggctcct
tcctttggaaccctgctggccaccatcaacgtggctctgagcatgttgagtgagatcgag
aagaagaaagagccggtgtctttgagcatcgcctctctagcttcatcagaggagatccag
gctctgaagtcgctgctgatgttcaccatggagaactgtttctacgtcctcatctctcag
gctgtgcgatgtctcaaagatccctccatcctccctcgagacaaacagaggctcaaacag
gagctcagctccgaactgagcactcttctctccagcctgtcccgccacttccgccggggc
tctccatcgtctccggccagcggcatcctcccctccacccagtccaaaccccccacacca
ggctccaagggaagccatgaaggtcaggagccgttcatccagctcgtccaggcgtttgtc
agactcgtgcagagatag
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integrated database retrieval system
