Hippoglossus stenolepis (Pacific halibut): 118125444
Help
Entry
118125444 CDS
T08308
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118125444
03041 Spliceosome [BR:
hsp03041
]
118125444
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
118125444
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118125444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
118125444
NCBI-ProteinID:
XP_035039890
LinkDB
All DBs
Position
18:15654918..15665522
Genome browser
AA seq
447 aa
AA seq
DB search
MQARSVRHLCRLPPLFTVETTAALNQFHCALNSPDGVTGRCPRQSWIYTQGCDLFSASKC
DRMDDDQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEHRH
ATATIAAMNGRKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPF
GKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPK
TPNETTSTKQLSFDEVVSQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVFPDK
GYSFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGKETTDMVSPIQQVHMPQQNTVSFAA
QPYSQWGQWYSNTQQIGQYVPNGWQVPSYGVYGQTWDQQGYNHLHAGAGWTGVGAVSNGS
MVEPGQGVNGTMLTNQAGMSAAGYHTH
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcccggtccgtccgccatctttgtcggctccccccattgttcactgtggagaca
acagcggcgctaaatcagttccactgcgcattaaactcaccggacggtgtcacaggccgc
tgcccgcgacagtcgtggatttacactcagggttgcgacttgttctcggccagcaagtgt
gacagaatggacgatgaccagcccaaaaccctgtatgtggggaatctgtcccgggacgtg
acagaggccctcatcttggagttgtttggccaaattggaccttgcaagagctgtaaaatg
atagtagatacggcaggtcatgatccgtactgctttgtggagttctatgagcatagacat
gccactgccacaattgcagccatgaatggtcggaaaatactgggtaaggaggtcaaggtc
aactgggccacaacgccaaccagtcaaaagaaagacacaagcagtcacttccatgtcttt
gttggggatcttagtcctgaaattaccacagatgacataaaagcagcttttgctcctttt
gggaaaatatcggattgtcgagtggtgaaagacatggccacaggtaaatctaaaggctat
ggctttgtgtccttcttcaacaaatgggatgcagagaatgccatacagcagatgggaggg
cagtggttgggaggcaggcagatcaggaccaactgggccacgaggaagcctgctcctaaa
actccaaatgaaacaaccagtaccaagcagctgtcctttgatgaggtggtgagccagtcc
agccccagcaactgcaccgtctactgtggaggagtcacaacaggcctcacagagcaaatt
atgagacagaccttctcacccttcggccaaataatggaaatccgtgttttcccagacaaa
ggctactcatttgttaggttcaactcccatgaagcagcagctcatgccattgtctcggtc
aatggcacgtccatagagggctatgttgttaagtgttactggggcaaagaaacaacagac
atggttagccccattcagcaggtacatatgccacagcagaacacggtgagcttcgcggcg
cagccctacagccagtggggtcagtggtacagtaacacgcagcagattggtcaatatgtg
cccaatggatggcaggtgccaagctacggagtttatggacagacctgggatcagcagggc
tacaatcatttacatgctggtgccggatggacaggagtgggcgccgtgagcaacggcagc
atggtagagcctggacagggagtcaacggaacgatgctaaccaaccaggccggcatgagc
gctgctggctaccacacccactga
DBGET
integrated database retrieval system
