Hippoglossus stenolepis (Pacific halibut): 118125574
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Entry
118125574 CDS
T08308
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
118125574
Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
118125574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
118125574
NCBI-ProteinID:
XP_035040184
LinkDB
All DBs
Position
2:complement(22582231..22607173)
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AA seq
1792 aa
AA seq
DB search
MATPAAAAAAAEEEEEEAAEEEAAAAAADVPSPATRDEPEEPNIPEPEPACQEAQKWIEA
VTGKSFGDKVFRSALENGILLCELLSAIRPGLVKKINRLLTPIAGLDNLSVFLRGCEELG
LRGSQLFDPGDLQDTSMRANLKDSDCNRKLKNVLNTVFWLGKAASGCASYSGPTLNLKEF
EGLLSQMKMETEEGGDSPQKRSVRDSGYDCWDSERSDSLSPPRHTRDNSLDSLDSFGSRS
QHSPSPDVVNRGNTDGRGSDSEADGSGRRPDVRKDDMLARRTASGESRSSIPFNQFLPNR
TNASSYIPAPRRKPHTEDGEQRSHLQATPEQSSKRTGLHLKTAKTVTWAVESNGEKLKQE
EEKVAQEVLEQRRLQKLEKMGIKVLPAAVRYSSAPTVEEEEVRSPSPSIILRRDNDFLTS
QKSAWDSSSDAEEEAEAQKVPDVRKDDLASRRAHRGAVAPRVHQFVPAVCSNKDRERWEG
IRRASQQTLQEREISEKEALPDIITRKDNPFLNSAPRREEEEDEEEEGRVKAMPNKQKDD
LARRRAQSRTLPQRDGPMSFVSASMSQADMKKWEKLKMTEPSEASAAPVCQACLEKSYGT
PLSGSAKAGRGHSKVVTFGGVTEIEQPIDTVTSNEGEETELLRRLLSKATVAMPTIGLGS
QLSERERSQVDGADLSQTTPPSAGLPPWTPECAATPAELDARLAQYERRAQEEEEEEDEE
EQERIPDLQKDDMMARRAGAFHKQSTATATYNRFLPLPSSKRCTPREDTPDAAPRNKKEV
QMERNKKLGVRVEQQQQQQQQQQQQQQQQPRVHMETPQPQPDAMAVRLTPHNEREYDEDE
DEDEYDENEPLPDLEKDDMMARRTGSYQKPTAPRTNQFRNQFLPVPGSVKYSVSPVSAMK
PLHSRPKHAEKMTSESRSIIVAAEPQAPPPAPPTGPKCTMLMERQEKEEAGKQEGDMRVP
NTSVTGLTEPLSSPSLTPPPSPAAAAAALICKVEAVLETKTERRVEERKRDVNEPPRKKP
LWLEDDDLPPIMMSRRVAFMSEDTESVSLGDMLNEEEVGYLPPLSQSRHERMQEQYSFQE
EEDHWHNDLARWKTRRRSTSQELIKKEEERKRMEKSMKEHGGDGNKRKSIKTYNQILEEK
ERRELELCEAYRNAATPEEAAVVLQRYALRFTISDATLDSLKLPRSTSKPTSDASRVDEE
DKTSSAVEDSETSEPLRKPEPAVVTEQREMKPEEIEKDTTPQQETSVSVPTSSPTPTSPP
TTVTNSENKPPQLIELIKPQSKPTESPTAHQTQQITGDAKPQTKHTPPRITQAQPHTKQP
AHTIPSPPSVPSRPLPLLVAKPYCQPRSTPSGHKPVKMDVLVRVNGEATEDLSTPATPAS
PQHSPQEIEDVSSKQTEKDFPAEETLVKNQETTEQPPPPPPPPQTEKSTASSGSAISSLI
GGRNCIITTTIVTELTQTLVEPLNPEQSNGQVNGTTGLVASPVKEKKEPPASSASSMQEY
SPTVTEGLEESSVTIETPMLNLAKRVNHWVWDPNEERNRLEMWQQEQERLLQEQYHKEQE
KLKKEWEKAQIEVEEEERKHNEEERRILEETVTPLNPSGSLKQQLVKTETTPSAPPNNET
ENGHVPPQQNGQRVSAGNEDQHASKLHFFQDPVCDGEPSKKQELWKTASLDRNLQLNQTQ
AVKRSGSHDVVTGKQQQASSSSSSLPPQPPSPSRCVSGKRLCCGCSQPLGKGAAMIIDTL
GLFFHIQCFKCGVCDGQLGDASAGTDVRIRNGQLSCYECYMATRGRGQPTTL
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccccgccgcagcagcagcagcagctgaagaagaagaagaagaagcagctgaa
gaagaagcagcagcagcagcagcagacgtcccgagccctgcgacgcgggacgagccggag
gagccgaacattcccgaaccggagcccgcgtgtcaggaggcgcagaaatggatcgaggct
gttacagggaagagctttggagacaaggtcttccgcagcgcgctggagaacggcatcctg
ttatgcgagctgctgagtgcaatcagaccagggctggtcaagaagatcaacagactgctc
acccccatcgccggcctggacaacctgtcagtcttcctgcggggctgtgaggagctgggc
ctgaggggctcccagctgtttgaccccggggacttgcaggacacgtccatgcgagcgaac
ctcaaggactccgactgcaaccgcaaactaaaaaatgtgctgaacacagtgttctggctg
gggaaggctgccagcggctgtgcctcctacagtgggcctactctcaacctcaaggagttt
gaagggcttctttcccaaatgaagatggagactgaggaaggaggcgacagtccacagaag
cgcagtgttagagacagcggctacgactgctgggactctgagaggagcgattctctctct
ccaccacgacacacccgcgacaactccctcgacagtctggactcctttggctcccgctcc
cagcacagtccttcccctgatgtggtgaatcgaggcaacactgatgggcgaggcagcgat
tcagaggccgacggctccggcaggaggccagatgtgcggaaggatgacatgttggccagg
cggactgccagcggggagtcaaggagctccatccctttcaaccagtttcttcccaaccga
accaatgccagctcctacatcccagctccgcggcgaaaaccacacacagaggacggagag
cagcggagtcacttgcaagccactccggagcagtccagcaaaagaactggactgcacctc
aaaactgccaagaccgtcacttgggccgtcgagagcaatggggagaaactaaaacaggaa
gaggagaaggtggcgcaggaggtgctggagcagaggaggctgcagaagttggagaagatg
gggatcaaagttctgccggctgctgttcgctacagcagcgctcccacggtggaggaagag
gaagtgaggtcaccatccccgagcatcatccttcgccgggataacgactttttgacctct
cagaaatctgcctgggattcctcctcggatgcggaggaggaggcagaggcgcagaaagtt
ccagatgttcggaaagatgacctggcgtccagacgagctcatcgcggcgccgttgctccc
agggtgcaccagtttgtcccggcagtatgtagcaacaaagaccgggagcgctgggagggg
attcgacgggcctcccagcaaacactgcaggagagagagatcagtgagaaggaagcgctt
cctgacatcattacacgcaaagacaaccccttcctaaactctgcccctcgccgcgaggaa
gaggaggatgaggaggaagaggggagggttaaagcgatgcctaacaagcagaaggacgac
ctggctcgtaggcgggctcagagtcggaccctccctcagagggatggaccaatgagcttt
gtttctgcctctatgagccaggcagacatgaagaagtgggagaaactcaagatgactgaa
cccagtgaggctagcgcggcacctgtgtgtcaggcttgtctggagaaaagttatgggact
cctctcagcggatcagcaaaggctggacgaggtcacagcaaagttgtgacctttgggggc
gtgactgagatcgagcagccaatagacacagtcacatcaaatgaaggggaggagacggag
ttgctaagacgactcctttccaaggcaactgtagccatgcctaccattggcctgggctcc
cagctttcagagcgggaacgcagccaggttgatggagccgacctcagtcaaaccacacct
ccttctgccggtctcccaccctggacccctgagtgtgccgcgactcccgctgagctggac
gctcgtctggctcagtacgaaaggagagcacaggaggaggaggaggaggaggatgaggag
gagcaggagaggatcccagatcttcagaaagacgacatgatggcaaggagggcaggagct
ttccataaacaaagcacggccacagcgacttacaaccgcttcctgcctctgcccagctcc
aagcgctgcacaccgcgggaggacactcccgatgctgctccgcgtaacaagaaggaagtg
cagatggagagaaacaagaaactgggcgtcagagtggagcaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacaaccaagagttcacatggaaacacctcaaccacag
cctgacgcgatggcggtgcgattgacacctcacaacgaacgggaatacgatgaggatgag
gatgaggatgagtatgatgaaaacgagcccttgcccgacctggagaaggacgacatgatg
gcacggaggacgggatcttaccaaaagccaactgcacccaggactaatcagttccgtaac
cagttcctgcccgtacctggatcagtcaaatatagcgtcagccctgtgtcggcaatgaag
ccgctacacagcagacccaagcacgctgagaagatgactagtgaaagccgcagcattatc
gtagcagcagaacctcaggcaccaccccctgcccccccaaccggccccaagtgtacaatg
ctgatggagcggcaggagaaggaggaggctggaaagcaagagggagacatgagagtcccc
aacacctctgtcacaggtttgactgagcccctctcttctccatcactcacccctccaccc
agtcctgccgctgctgctgctgcactgatctgtaaagtggaggccgtgttggagacaaaa
acagagagaagggtggaagagagaaaaagggatgtgaatgagccaccgcgaaagaagccg
ctctggctggaggacgatgatctacctcccatcatgatgagccggcgagttgcttttatg
tctgaggacacagagagtgtgagtttgggtgacatgctcaacgaggaggaggtgggatat
ttaccaccgctgagccaatcccgacacgagcgcatgcaggaacagtacagctttcaggag
gaggaggaccactggcataatgacctggctcgctggaagactcgccgtcgcagcacgtca
caggagctcatcaagaaagaggaagagaggaagaggatggagaagagcatgaaggagcac
ggaggtgacggcaacaagaggaaaagcataaagacgtacaatcagatcttggaggagaag
gagcgcagagagttggagttgtgcgaggcctataggaacgcagcgactccagaggaggca
gccgtggttttacagcgctacgctctccgcttcaccatcagcgatgcaacactggacagc
ctgaaactgcccagatccacctcgaaacccacatcagacgccagtcgggtggacgaagag
gacaaaacctcctcagctgttgaagactcggaaacgtcagaacctctgcgcaaaccagaa
cctgctgttgtgacagaacagagggaaatgaaacctgaagagatagagaaagatacaact
cctcaacaagagacgtcagtgtctgtccccaccagttccccgacacccaccagtcccccc
accactgtcacaaattcagaaaataaaccaccgcagttgatagaactgatcaaacctcag
tccaaaccaacagagtctcccaccgcacatcagacacagcagattacaggagatgcgaag
cctcagaccaagcacacgccgcctcgaatcactcaagcgcagcctcacaccaaacagccg
gcccacacaatcccctcccctccatctgttccctccaggcctctgcccctcctggttgcc
aagccctactgccagcccaggagcacgccgtctggacacaaaccggtcaagatggatgtg
ttggtgcgtgtgaatggagaggcgacagaggatttatccactcctgccacgcccgcctcc
cctcagcactcgccacaggagattgaagacgtcagctccaaacagacagagaaagatttt
cccgctgaggagacgctggtgaaaaaccaggagacaacagaacagccaccaccaccgcct
ccgcctccgcagacagagaagtccaccgcatcttcaggctcggccatcagctccctgatt
ggaggccgaaactgcatcatcacaacaacgatcgtcaccgagctgacgcagacgctggtg
gagccgctcaacccagagcaaagtaatggacaggtcaatggaactactggtttggttgca
tcaccggtgaaggaaaaaaaggaaccgccagcttcatcagccagcagcatgcaagaatat
tctcccaccgtcacagagggactggaggagagcagtgtcactattgagacccccatgttg
aacttggctaaacgtgttaatcactgggtctgggaccccaatgaggagcgtaatcgcctg
gaaatgtggcaacaggagcaggagcgcctcctacaggagcaataccacaaagaacaggag
aagctgaagaaggagtgggaaaaagcccagatagaggtggaggaggaggagcgaaaacac
aatgaggaggagagacggattctggaggagactgtaacgcccctcaatcccagcggctcg
ttgaagcagcagctcgtcaagacagagacgactccatcagcgccaccaaacaacgagacg
gagaacggccatgttcctccgcagcagaacggccaaagagtctccgcggggaacgaggat
cagcacgcgtcaaagctgcattttttccaggatcctgtgtgtgatggtgaaccctcaaag
aaacaggagctgtggaagacggcgtctttagaccgcaacctccagctaaaccagacacag
gctgttaaaaggtctggatcacatgacgttgtaacaggcaaacagcagcaggcttcctcc
tcttcatcatcattaccaccacagccaccttcccccagcaggtgtgtaagtgggaagaga
ctttgctgtggttgttctcagcctctgggaaaaggagctgccatgatcatcgatacactg
ggactgtttttccacatacagtgttttaagtgtggagtgtgtgatgggcagctgggcgac
gcctctgcagggactgacgtgaggattcgaaacggccagctgagctgctacgagtgctac
atggcaactcgtggcagaggacagcccactacactatga
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