Hippoglossus stenolepis (Pacific halibut): 118125584
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Entry
118125584 CDS
T08308
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118125584 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118125584 (prpf4)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118125584 (prpf4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
118125584
NCBI-ProteinID:
XP_035040206
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Position
18:complement(1314352..1321675)
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AA seq
510 aa
AA seq
DB search
MSDEDDIAPPVKRGRVYYGSLEEKERERLSLEMGRGTTTGSDAVKAGIEAGNINISSGET
LEMEERVSERQHEALAEFERRRRARQITVSTDDTEVKAGLRALSEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDDERGKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAMER
LEAARTQRDVAEATRVMRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCSPIRTLRGHNTNVGAIVFRPQAGVSLDQGDVSLASCAADGSVKLWNLES
DEPVADIEGHSERVSRVSWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLH
FHPDGSLAATGGLDSFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCK
VWELRNRKCLYTIPAHQNLLSAVRYQPTDGHFLLTGAYDNTAKVWSHPGWTPMKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWVSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgaggacgacatcgctccgcccgtgaagaggggtcgggtttactatggaagc
ctggaggagaaagagcgggaacggctgagcttagagatggggagaggcactacgacagga
agtgatgcggtgaaggcggggattgaggcgggaaacatcaacatctcatcaggagagaca
ctggagatggaggagcgggtcagcgagcggcaacatgaagcgctggctgagtttgagcgg
cggcggcgtgcacgtcagatcaccgtctccaccgacgacactgaggtgaaggctggtctc
cgggcactcagtgagccaatcacattgttcggagagggaccagctgatcgccgggaaagg
ttgcggagcgttctctctgttgttggtccagacgctctgaaaaagtccagaaaagatgac
gagcgagggaaaagatcacaggacgagtgtcagcagacgtggtaccatgaaggctccgcc
tccctgaaggacgcccggctctggttggccaaatactctctgccccgggcaatggagcgt
ctggaggctgcgcgaactcagagggacgttgccgaggcgacgagggtgatgcgacaacaa
gagctacacaagagtctgaggaatttgaacaacttctgcagccagatcggtgacgatcga
ccaatcagcttctgccatttcagccctgactccaagatgttggccaccgcctcctggagt
ggtctgtgtaagctgtggtccgtccccgactgcagcccgattcgtacactcagaggacac
aacaccaacgtcggcgccatcgtcttccgccctcaggctggagtctctctcgaccaagga
gatgtcagcttggcctcgtgtgctgctgatgggtctgtgaagttgtggaacctcgagagt
gacgagcctgtggcggacatcgagggtcacagtgagcgagtgtcccgtgtgtcctggcat
ccatctggaaggttccttggaacgacgtgctatgataactcgtggcgtctctgggatctg
gaggctcaggaggaaatcctccatcaggaaggtcacagcaaaggagtccacgacctccac
ttccaccccgacggctcactggctgctactggaggcctggattcgttcggcagggtgtgg
gaccttcggactggacgctgtgtcgttttcctcgagggtcacctgaaggagatctacagc
ctgcacttctcccccaacgggtatcacctagcaacaggaagtggtgataacacctgtaag
gtttgggagctgagaaacaggaagtgcttgtacaccatccccgcccaccagaacctactg
tctgcagtccgctaccaacccacagacggtcacttcctgttgaccggagcgtatgacaac
acagcaaaggtttggagtcaccctgggtggacgccaatgaagacgctcgctgggcatgag
gggaaggtcatgggagtcgacgtgtcacctgacgggaaattgatcgcaacctgttcctat
gaccgcaccttcaaactctgggtatctgagtga
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