Hippoglossus stenolepis (Pacific halibut): 118125957
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Entry
118125957 CDS
T08308
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118125957 (rc3h2)
04121 Ubiquitin system [BR:
hsp04121
]
118125957 (rc3h2)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118125957 (rc3h2)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118125957 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_2
zf-CCCH
zf-RING_UBOX
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf-C3HC4_2
zf-RING_4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
118125957
NCBI-ProteinID:
XP_035040950
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All DBs
Position
18:complement(7819526..7845327)
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AA seq
1157 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQIPDMQPVSLSGAAEVENYEVCRVCVEELALYLKPISGAKGVAT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRQHLELLADI
DHNPDAPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSNSVGRAFPLAPGVMGKTFTMEGSLHEDVSA
GVVEGLKGTGDNATNLTDGVPGLTHPQFINRGADIIEEMKRVVPNGTSGANGCNGLPGTN
RTTSGATEQKPISPPRTPVSHSASSPLTPVARGDGGAPIPKHGQFMLRAPHPSQATELYY
QEPHSAYDTPHYQQTSGSYYPSTLHHPHKPCMARFLRSSNVPESPLPPSMGPPPTSYHSD
PQSPHPPSSSSSGYPPHPPRDRMGPAFHPHPGQPQYGPLAPAHGVYAPLYDSRRVWRPQL
YHREDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSGADHRTGLHRDYSRVPLGYEDL
FRRKQEQWAHHHHHHNTNRPSQSSPIFTIDFGTEHLESSGGQCAGCRFRGEESLAHYSPW
SCGTIGPCLSPFEPETLTHSSAHSCSEHPELEANGGRGGGGGGGGGGGSSSSSSVGKRWL
HSLDHYRRLKDEDPIIPFSEGPIISKWGAISRASRTGYHTTDPVQATACQRSSSTTPINF
KDYNPHLDHSDYRWGSRGSDSSSHSSFLESEQLCASELHGRRTSISSGERIVTCNLQAHH
AVYSQDRERAESEPDPGRDIELELCALDMEDSDPQERRSQESLDLITSPSQDASHLLPPP
CSSPLLSSPVKERPRTEGTLTEKMDAHLLKKMAFRKSLSPGGLVSRGLGVGKLVLRTGPS
RLGDPSTPGTEMLLNGS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcagcccagtggacagagttcctgtcctgtcccatctgctacaatgag
ttcgacagcagcggccaccagcccatcagcctgggctgctcccacacggtgtgcaagacc
tgcctgcacaaactgcaccgtaaagcctgccccttcgaccagacgccaatcagcaccgac
atcgacctgctgccggtcaactgtgccctgctgcagctggtcggagctcagatccctgat
atgcagccggtgagcctgagtggtgcagcagaggtggagaactatgaggtctgcagggtg
tgtgtagaagagctggctctctacctgaaacctatcagcggagcaaaaggtgtcgcgacc
ctgagtccgagtgtgctcagtcggcccatgcagaggaagctggtgaccctggtgaactgc
cagctggtggaggaggagggccgtgtgcgggcggtgcgggccggccggtcgctgggggaa
cgaaccgtgaccgagctcatcctgcagcaccagaacccccagcagctctctgccaacctc
tgggcggcggtgcgggcgcggggatgtcagttcctgggacctgctatgcaagaagatgca
ctgaagctggttttactggcgctggaggacggctcagctctgtccaggaaggtgctggtt
ttgtttgtagtccagaagctcgaggctcggttcccccaggcctccaaaaccagcataggc
cacgtggtgcagctgctctacagggcctcctgcttcaaggtgactaagcgtgatgaggac
tcttcactaatgcagctgaaggaagagtttcgcacatacgaggctctcaggcgggaacac
gatgcccagattgtgcacatcgccatggaggcgggcctacggatctcaccggagcagtgg
tcgtctctgctgtacggagacctggtccacaagtcacacatgcagtccatcattgacaag
ctgcagtctccagagtcatttgcaaagagcgtccaggagctgacaatcgttctgcagagg
acaggagacccggccaacctcacgagcctcagacagcacctcgagctgctggccgacata
gaccacaatccagacgccccagcaccatcatgggaggagctggaaagcgtgatgttggct
gtgaagttggtggttcacggactggtggaattcatacagaacttcagcaagaagagccac
gacacgccgcagcctcaagccaacagcaagtataagaccagcatgtgccgggacctccgt
caacagggcggctgtccccgaggaaccaactgtacattcgcgcacacacaggacgaactg
gagaaatttagactgaggaacaagaagagcaacagcgtgggccgcgcatttccgttggcg
cccggggttatgggtaaaaccttcaccatggagggcagcctccacgaagacgtgtcggcg
ggagtggtagaggggctcaaaggcacaggggacaatgcaactaacctgacagacggtgtt
cctggcctgactcacccgcagtttatcaacagaggggctgacattatcgaggaaatgaag
agggtggtgccaaatggaaccagtggggcgaacgggtgcaacgggctacctggtaccaac
agaaccacgtcgggtgcaacggaacagaagcccatctctcctcccaggactccagtcagc
cactcagcatcatcccccttgaccccagtcgcgcggggtgacggtggcgctccgataccc
aaacacggtcagttcatgctgcgtgcgccacatccttcacaggcgacagagctgtactat
caggagccccactctgcttatgacacgccccattatcaacaaacctcaggttcttattac
ccttctactcttcatcatcctcacaaaccctgcatggctcgcttcctcaggtcgtccaat
gtcccagaatcccctctgccgccctccatgggacctccaccaacttcctaccacagtgac
cctcaatcgcctcacccaccctcctcttcttcctcggggtaccccccacacccacccaga
gatcggatgggtcccgccttccatccccacccggggcagcctcagtatgggcctctggct
cccgctcatggggtttatgctccgctctatgacagcagacgagtatggaggcctcagcta
taccaccgagaggacgccaggagtaactcgctgcctccagaggtgctgcattcctccgtc
taccagcctccactcagggagagattcaactctctagacagcaactactgctccggagcg
gaccatcgcacagggctacacagggattacagtcgtgttcctctgggctacgaggatctg
ttcaggaggaagcaggagcagtgggcgcatcatcaccaccatcacaacaccaacagaccc
tcccagtcctcccccatcttcaccatcgactttggaactgagcatttggagagcagcgga
ggccagtgcgccgggtgccggttcagaggggaggaaagcttagcccactactccccgtgg
tcctgtggcaccatcggcccctgcctcagtccctttgagcctgagacactgacgcacagc
tccgctcactcctgctcggagcacccggagttggaggctaacgggggcagaggcggcggc
ggcggtggcggtggtggcggcggcagcagcagcagcagcagtgtcgggaagcggtggctg
cattcgttggatcactaccggcgcttaaaagatgaggaccccatcattcccttcagcgag
gggcccatcatctccaagtggggggccatatccagggcgtcacgcacgggctaccacacc
accgacccggttcaagccacggcctgccagagaagctccagcaccacacccatcaacttt
aaagattataacccacacttggatcacagtgactacaggtggggctccagaggatcagac
tcttccagccactccagtttcctcgaaagtgagcagctttgtgcatcggagcttcacggc
cggcgaacctcgataagcagtggagagagaatcgtgacctgtaatctgcaggcgcatcac
gccgtctacagccaggaccgggagcgagccgagagcgagccggacccgggccgagacatt
gagctggaactgtgcgctctggacatggaggattcagacccccaggagagaaggtctcag
gagtctttagacctgattacttctccgtctcaggatgcttcccacctcctgccgcctccc
tgctcctctcccctcctctcatcccctgtgaaggaacgcccccgaacagagggtactttg
acagaaaagatggatgctcacctgctgaaaaagatggccttcagaaagtctctgtctccc
ggcgggttggtctcgaggggtcttggcgtcggcaagctggtgctgcggaccggaccctct
cgactgggggacccttccacgcccggcacagagatgctgctgaatggaagctaa
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