Hippoglossus stenolepis (Pacific halibut): 124852407
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Entry
124852407 CDS
T08308
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124852407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hsp03009
]
124852407
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
Pre-60S particles
RNases
124852407
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
KIX_2
CENP-F_leu_zip
Zwint
Motif
Other DBs
NCBI-GeneID:
124852407
NCBI-ProteinID:
XP_047197291
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Position
9:complement(22810838..22820922)
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AA seq
1200 aa
AA seq
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MFRSSGLFADVKCPSRGLGLCERPHCFYKHGSRQRAASAASAAASFQPSAVPSAEVQNCY
LSLVCGSPASDDTTDDSLQELERINKEIEAVRHEVEQEQRRLSHYQTIQSDSRNTVSKSE
TTGKRQDRRSLSSHSDVRKTYSRTKKYVVDNSKPRTDLEYDPLSNFSADLRSYSSSSKEQ
KVKNAQVINGERDPVPCDQKRPVAQAPFSPQTPSPGLLEDPIEDSVLIIDIPPSPDQTRG
QSQKPDCVAGSAQGTVEQLKERVPIALDSPLLRFADAAAYQFTSPRASRVESLKAWENIP
VDGSVIDLTGCLEDLENECQRISCQAAETEVDNSPEPVSPPASSDQQYQSYYNLGIEEEE
NAPQVELPLFEVSGSVERMNPLQSHYFQSKHSPSYTAPAANSGSPCRKRTTQAQTTEMYV
HNHLSPKRSAPPLVSGSQEMSGTIPGQMQGGSLINQASAVVYQEQAEPASGSNQCQNQNS
LSTSVNSHLMNRGDSTSETTEELLVKEGHEEVIIISSSEDEQELNYSDIELSESDPMEEC
YRIFMEANDEDKGNKEQPDVSVAAMEVEKAELTTTPQTLPGKKRVAHEAKHAEQPLAKSR
PQAKILIPLREPAASGSGSQSSIPSKILPAQQRASMLTASVKGAQAFASFSCQKKPETQT
TACPPQTPANIQPAPVQNAYINYLPLGTPVIQVGSNLHLILPEGTFPLSVTSSSCPVSSV
LTPVTQVHMSTMKQTCHKAAVTPVQRYHPTAPMLIPAPTRKTSLASATAHLHPAASTTSQ
PTAAAKPAPTKRRLKQQSGATKEKVPHDVRQRYVTMFTEEFLKTTANVNEAFEKAVAEEE
TVYNRSANKLKYLSVAVNSLKRLKKQSCVSSKDENEVNGQRSKGNITFNLEMFQANDDVA
LYESLKDYILTEEKLIESNYPVQHPEKAGSAALFADNKKGSTDPLKRICCRCGATYSVGL
TGKHIRKEECNYHYGKVVKNKVPGGVETRYSCCQGVMGAPGCQVFKLHVHDFISMDGFVS
TKHRHPMDTSCPGVYSLNCEMCYTVHGLELSRVTVINSSLQVIYDTFVRPDHEVIDYNTR
FSGIGEEDVKGNYTSVREVQETLQSFISADTILIGHGLEADLCGLKLLHGTVVDTSLVFP
HRLGPPHKLTLNKLTAEYLLRIIQESGGSSWIQPRHKCLQTTTHLNLHPNKDKITVVLYV
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgctcgtctggtctcttcgcggatgtgaagtgtccctcccggggactcgggctc
tgtgagcggcctcactgcttctacaaacatggctctcggcagcgggccgcctccgccgcc
tccgccgccgcctcctttcaaccctccgcggtcccctcagcagaagtccagaattgctac
ctgtcacttgtctgtggatccccagcgagcgatgacaccacagacgacagtctccaagag
ctggagcggatcaacaaggagatcgaagctgtgaggcacgaggtggagcaggagcaaaga
cgactgtcgcactaccagaccatacagtcagacagcagaaacactgtgtccaagtctgag
actacaggtaaacgacaggacagacgttctctttcgtcacactctgacgtcagaaagacg
tactcgcggacaaagaagtacgtggttgacaactcaaaaccaaggactgacttggagtat
gaccccctgtccaacttttcagctgacttgcggtcttacagctcatcaagtaaggagcag
aaagtgaaaaatgcacaagttattaacggagagagagaccctgtgccgtgtgaccaaaag
aggccggtcgctcaggctccattttctccccaaacgccatctccagggctactcgaggac
ccgattgaagacagtgtcctgattattgacattcctccctcacctgaccaaacaagaggc
caatctcagaaacctgactgtgttgctggcagtgcccagggtacagtagaacaactgaag
gagagggttcccattgcacttgattctccactgctgcgctttgcagatgctgcggcttac
cagttcacgtctccacgtgcatcaagggtagaatcacttaaagcatgggaaaatatacca
gttgatgggagtgtaattgacctaactggatgtttagaagatctggaaaatgaatgtcag
agaatctcttgtcaggctgctgaaacagaagtcgacaacagtcctgagcctgtaagtcct
cctgcctcctcagaccaacaatatcagagttattacaatctgggcattgaagaggaagaa
aatgcgcctcaggtcgaattgcctctgtttgaggtatccggtagtgttgagagaatgaat
ccactgcagtcacattattttcagtcgaagcattcgccttcatatacagctccggctgca
aactcagggtcaccatgcaggaaacgcaccacccaagcccagacaacagagatgtatgtt
cataaccacctgtctcccaagcgaagtgcaccaccactggtgtcaggaagccaggaaatg
tcaggcacaataccaggacagatgcagggtggttctctcattaaccaggcgtcagcggtt
gtataccaggagcaagcagaaccagcttcaggcagcaaccagtgtcaaaatcagaactct
ttatcaacatctgtcaactcgcatttgatgaacagaggtgattcaacatctgaaaccact
gaggagcttttggtcaaggaaggtcatgaagaggttataataatctccagctccgaggat
gagcaagagctcaactattcggacatagagctgtcagagagtgacccaatggaggaatgc
tacaggatcttcatggaggcaaatgatgaggataaaggaaataaagagcaacctgatgtg
tctgttgcagcaatggaagtggagaaggcagagttgaccaccacacctcaaactttacca
ggaaagaagagggtggcacatgaagccaaacatgcagagcagccactggcaaagagcaga
cctcaagccaagattttgatccctctgcgtgaaccagcagcttcaggatccggctcccag
tcctccatcccttcaaagatcctgccggcacagcagagagcctccatgctgactgcttca
gtaaaaggtgctcaggcttttgcttccttctcgtgtcagaagaagccagaaacccagact
actgcttgtcctcctcagacccctgcaaacatacaaccagcccctgtgcagaatgcttac
ataaactacctacctttgggaactcctgtgatccaagtagggagcaacttgcacttgatc
ctcccagagggcaccttccctctgtctgttacttcaagttcctgccctgtttcttcagtg
ctgaccccggtcactcaagtgcacatgagcactatgaaacaaacttgccataaagctgca
gtaactcccgtgcaaagataccatccaacagcacccatgctcattcctgctccgacgcgt
aaaacgtccttggcctctgctacagcacatttacatccagctgcctccactacatctcaa
cctactgctgccgccaagccagctcctactaaacgtagactgaagcagcagagcggggcc
accaaagagaaagtgccccacgatgtcagacagcgttatgtcaccatgtttacagaagag
ttcctcaaaacaacagccaatgtcaacgaggcctttgaaaaggctgttgctgaagaggag
accgtgtacaatcgcagcgccaacaaactcaaatatctgagtgtcgctgtgaattcactg
aagaggctgaagaaacaaagttgtgtttcatccaaagatgaaaatgaagtcaacggccaa
agatcgaaaggcaacataaccttcaacctggagatgtttcaagcaaatgatgatgtggca
ttgtacgagagtttgaaggattatattttgaccgaggaaaagctgattgagagcaactat
cctgtccagcacccggagaaagccggctccgctgctctttttgccgacaataagaaaggc
agcacagaccccttgaagaggatctgctgtcgatgtggggccacgtactctgttggccta
acaggcaaacacatccgcaaggaggagtgcaactaccactatgggaaagtagtaaagaac
aaagtgcctggtggagtggaaacccgctacagttgctgccaaggagtgatgggagcacct
ggatgtcaggtgtttaagttgcatgtccatgatttcatctccatggacgggtttgtgtct
accaagcatagacatcccatggatacgagttgtcctggagtctactccttgaattgtgaa
atgtgttacactgttcatggcctggagctttccagagtgacggtgataaactctagttta
caagtcatctacgacaccttcgtcagacctgatcacgaggtcattgattacaacacaaga
ttttcaggcatcggggaggaagacgtgaagggtaactacacgtccgtcagagaggtgcag
gagacgttacagagcttcattagtgctgacaccattctgattggacacggcctggaagca
gatctctgtggcctgaagttgctccatgggacagtggtggacacatcgctggtcttcccc
caccgtctggggcccccccacaagctcaccctcaacaaactgacagctgaataccttcta
cggatcatccaagagagcggtgggtcctcgtggatacagccacggcacaaatgtctacaa
actacaacccatctgaatttacatccaaataaagacaaaatcacagtcgtattatacgtt
tga
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