Hippoglossus stenolepis (Pacific halibut): 124852421
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Entry
124852421 CDS
T08308
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03030
DNA replication
hsp03410
Base excision repair
hsp03420
Nucleotide excision repair
hsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124852421 (rfc5)
03410 Base excision repair
124852421 (rfc5)
03420 Nucleotide excision repair
124852421 (rfc5)
03430 Mismatch repair
124852421 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsp03032
]
124852421 (rfc5)
03036 Chromosome and associated proteins [BR:
hsp03036
]
124852421 (rfc5)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
124852421 (rfc5)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124852421 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
124852421 (rfc5)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
124852421 (rfc5)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124852421 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
124852421 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
RuvB_N
AAA_14
AAA_16
AAA_assoc_2
DEAD
ResIII
DUF815
PhoH
AAA_7
ATPase_2
AAA_19
AAA_30
AAA_5
TIP49
AAA_2
nSTAND3
Mg_chelatase
Thioredoxin_6
AAA_25
DNAX_ATPase_lid
AAA_3
DUF4119
Motif
Other DBs
NCBI-GeneID:
124852421
NCBI-ProteinID:
XP_047197326
LinkDB
All DBs
Position
9:25107896..25112187
Genome browser
AA seq
335 aa
AA seq
DB search
MAETSKDPRRSTNLPWVEKYRPQKLDDLISHKDILTTIQRFISEEKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
DYVVQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSD
IANILDWSLNKDFTASYKQILQLKTLKGLALQDILTEVHLLVHRVDFPPDIRIGLLIKLA
DIEHRLASGTDEKIQLSSMVAAFQAVRDLVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaccagtaaagacccgagacggtccacgaaccttccctgggtcgaaaagtac
agacctcagaaacttgatgatctgatctcacacaaagatattctgaccaccatccagagg
ttcatcagcgaggagaagctcccccacctcctgttctatggtccccctggaaccggcaag
acctccaccatcctggcctgtgcccggcagctgtacaaggacaaagagttcaactccatg
gtgttggagttaaatgcatcggatgaccgaggaatcgatgttgtacgaggacccgtcctg
agctttgccagcacacgcaccatcttcaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggatgcccagaatgcattgcgacgagtgattgagaagttcaca
gaaaacactcgcttctgtctcatctgcaactacctgtccaagatcatcccggctctgcag
tctcgctgcaccaggtttcgcttcggcccgctgtccccagaccagatgattccccgactg
gactatgtggtccagcaggagagtattgacatcactccagatggaatgaaagccatcgtg
actttatcatccggtgatatgaggagatctctcaacatcctgcagagcaccagcatggcg
tatgggaaggtcacagaggacacagtgtacacctgcacaggtcaccccctccgctcagac
atcgccaacatcctcgactggtccctcaacaaggacttcaccgcatcatacaaacaaatc
ctgcagctgaagactttgaagggtttggctctgcaagacatcctcactgaggttcacctg
ctcgtacacagagtggactttcctcccgatatccggatcggtctgctcatcaagttggcc
gacatagaacacagactcgcctcagggaccgatgagaagatccagctgagctccatggtg
gcagctttccaggcagtgagggacctggtggtcagcgaagcctcgtag
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