Hippoglossus stenolepis (Pacific halibut): 124854681
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Entry
124854681 CDS
T08308
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
124854681 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
hsp03310
]
124854681 (rorca)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124854681 (rorca)
Nuclear receptors [BR:
hsp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
124854681 (rorca)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
124854681
NCBI-ProteinID:
XP_047198855
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Position
14:complement(16983025..16996883)
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AA seq
494 aa
AA seq
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MDRETCPHVVESSDDRRVLQLTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQN
NAMYSCSRQRNCLVDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKH
QQSQECAGLGPREDNGDMADLTCPYKRGSSTALSDLDDITTLQGDLLFDLPLTPRDGGGD
YCNLDMLGGSAGSSSSSQSSPEQTNFDFVDGNLGIKHEYQLLHDSGLFSHAILNPLPGGC
SLLEIERITQSVVKSHIETSQYSTEELKRMAWTLYNPEETRSYQTKSAEVMWQQCAIHIT
NAIQYVVEFAKRISGFMDLCQNDQIILLKAGCMDVLLIRMCRAYNPINNTLLFDGKFATP
QFFKALGCDDLVNAVFDFAKSLSRIQMSEEDMALFSAAVLLSPDRPWLTDVQKIQKLQDK
VYVALQRCLQKEGASEEKLAKMVSRLPIMKSICNLHIDKLQFFRLVHPETAYTFPPLYRE
VFGSEITFPDSTEG
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtgaaacttgtccgcacgttgtcgaatcttctgacgatcgaagagtgcttcag
ctaacagctcaaatagaggtcattccctgcaaaatctgtggggacaaatcatcagggatt
cactatggtgtcatcacctgtgaaggctgcaagggtttcttccgacgtagccagcagaac
aatgctatgtactcctgctcacgtcagagaaactgtctcgttgaccggaccaaccgtaac
cgctgtcagcactgcaggttgcagaagtgtcttgctctgggcatgagccgtgatgctgtg
aagtttggtcgaatgtccaaaaaacagcgtgacagcctgtatgcagaggtccagaagcac
cagcagtcccaggagtgtgcgggcctcggcccccgcgaggacaatggcgacatggccgac
ctcacctgcccctacaaacgaggctcaagcactgcactcagtgatctggacgacatcacc
acgctgcaaggagacctacttttcgacctcccactgaccccgagggacggaggtggtgac
tactgtaacctggacatgctgggtggcagcgcaggcagcagttcatcctctcagagttca
ccagaacagaccaactttgactttgtagacggcaacctcggcatcaagcatgagtaccag
ctgttgcacgactctggactcttctcacatgctatcctcaacccgctgccggggggctgc
tccctgcttgaaattgagcgtataactcagagtgtggtcaagtcccatatcgagacaagc
cagtacagcacagaggagctgaagagaatggcgtggaccttgtataacccagaagagaca
cgctcatatcagaccaagtcagctgaggtgatgtggcaacaatgtgccattcacatcacc
aacgcaatccagtacgtcgtggagtttgccaagcgcatctctggcttcatggacctgtgt
cagaacgatcagattatcctcctcaaagcaggctgcatggatgttcttctgatccgcatg
tgtcgggcctacaaccccatcaataacacattgctcttcgatggaaagtttgctacccct
cagtttttcaaagctctcggctgtgatgacctcgtgaacgcagtgtttgactttgccaaa
agcctgagccgcatacagatgtccgaggaggacatggctcttttcagtgctgctgtgctg
ctctcaccagaccgaccctggctcacagatgtccagaagatacagaagttgcaggacaaa
gtctacgtggctctgcagcgctgtctacaaaaagagggggcatcagaagagaaactagcg
aagatggtgtccaggctccccataatgaagtcaatttgcaacctccacatcgacaaactg
cagtttttccgcctggtgcacccggagacagcatacacgtttcctcctctgtacagggag
gtgtttggcagtgaaatcaccttcccagactccacggagggttag
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