Hippoglossus stenolepis (Pacific halibut): 124854730
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Entry
124854730 CDS
T08308
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
124854730 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
124854730 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
hsp04131
]
124854730 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
hsp03029
]
124854730 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hsp04812
]
124854730 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
124854730 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
124854730 (si:dkey-110c1.10)
Membrane trafficking [BR:
hsp04131
]
Others
Actin-binding proteins
Myosins
124854730 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
hsp03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
124854730 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
hsp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
124854730 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
HTH_17
Myosin_N
SieB
AAA_16
Motif
Other DBs
NCBI-GeneID:
124854730
NCBI-ProteinID:
XP_047198990
LinkDB
All DBs
Position
14:17953614..17970579
Genome browser
AA seq
1658 aa
AA seq
DB search
MATLELYSKGASVWIPDPDAVWVSAQLLQDYAPGEKHLLLQLSNGKETHYPVGSPADLPP
LGNPDILEGENDLTALSFLHEPAVLHNLRVRFLDYSSIYTYCGIVLVAINPYDQLHIYGE
EVIDAYSGQDMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGSGKTVSAKFTMRYFA
VVGGAAQQTSVEERVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGAKMRT
YLLEKSRVVFQASSERNYHIFYQLCASRELPEMRSLKLDAPENFRYTNQGGEMQIPGADD
VSDLERTRNAFTILGVQPGQQMELFRILSAILHLGNANIQASGRSSDKSYIDADDRSLAV
FSKLLGVEGPQMAHWLCHRRLAVGGEMLVKPRSGQQAVVARDALAKHIYGQLFTWTVQRL
NSALRSQRGQTRSFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYV
REELPWSKIEFSDNQQCINLVEGQLGLFDLLDEECRMPKGSDESWVRKLYDQHLTSKPHP
HFQKPRMSNSAFIVLHFADLVQYECEGFLDKNRDTVYEELVNIMKASQSELVAELFQQQE
NVSSVANGSVRSGKRATREHRLTVGFQFRQSLQMLMDTLNSTTPHYVRCIKPNDLKEPFM
FDPKRTVQQLRACGVLETIRISAAGFPSRWTYEEFFSRYRVLLRGPQSLEQAQASCRRTL
PQIISDPDQYCFGKTKVFFRAGQVALLERLRAERLREAAVVIQSRVRGWLSRIRFTRVLW
ATVIIQRYSRGALARRLALTLRYTKAALVIQKMYRMVVVRQLFLMIRQATVTIQAFTRGT
LARRTYRQLVAERATVLLQARVRGWLARRAYRRVRAAVVFMQCCVRRRAARRRLLKLKTE
ARSVEKYRELNKGMEVKLMQLQLRADQEARKRAALKGTLHAEREAATAELEALRLIIQRL
ESQKQERPPPCSDISEKKEEKRRRAEDKAAQEILQLTQELQTLQREKDDFSKERDELSAR
SLEQEKAQEECVHQAVSQASAALRVELDEERRKYQGLLREFTRLEHRYDNLREMSLLTER
TSGHRRTDSTQSLSFEPPSPTLLSPQSLTPLPLSPFPFAFPSPEEVRGVIGTSPCRERTL
SVCSSETTMDSLMEKMDVAKDPAVKMRGEDLAHAYDAVRVANKFLESQLRNQRSQWEEEL
EALRHQASSASSSASQPQELQELLEAREQECVRLRSELKELRNTVSLRRLLTQVFPSALS
AESSSCPSQQKPAAVSGLLECRKRDEAKLMKNLITDIRVDTALSLPPGLPAIVLSLCVRQ
ADCSRDQTHARSLCSTAVTAVKAALKKHNNNIDMTALWLKNVCVLHDLLTQHSPKQTLDS
TELAPLTSDLSDLIHALSDLCIQAYQQLLSITETRLQNIIVPAMLESETIPGLSGSAVKL
GASRKRAGSDPRTAAGVAPTIASVLRELGVLHAAMTHQALPAPLMEQAFHQLTYLISASA
LNSLLLRKDICCWNRGMQIRYNLSLLEEWLRSRNLQAGGAVATLEPLIQAVQLLQTGKKT
EAEAQALVQTCSALSSQQIVKILTLYTPHSDLEERVSLNFIRTVQGLLKGRSDSQPPQLL
LDVRRVFPVTFLYSPPTGLHAEQLVIPDALKISFLRRV
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactggagctttacagtaagggggcaagtgtgtggattcctgatccggatgca
gtctgggtttcagcccaactcctccaggactacgctcctggagagaaacatctgctgctg
cagctctctaatggaaaggagacgcattacccagtgggctctcctgctgatctcccaccg
ttggggaaccccgacatcctggagggggaaaacgatctcacagctctcagcttcctccat
gagccggctgtcctgcacaacctgcgggttcgattcctggactacagcagcatctacacg
tactgtggtatcgtcttagtggccatcaatccctatgaccagctccacatctacggagag
gaggtgatcgatgcttacagtggtcaggacatggccgacatggaacctcacatcttttca
gtggcagaggaggcctaccgcaccatgaccagggaggagaaaaaccagtcgatcatcatc
agtggggagtcaggatcaggaaaaactgtctcagccaaattcaccatgagatactttgct
gtggtcggaggagcagcccagcagaccagtgtggaggagagagtcttggcttctaacccc
atcatggagtccattgggaatgctaaaaccactcgaaatgacaacagcagtcgttttggg
aaatacattgagatcggctttggtagaaagggcgacattatcggtgctaaaatgaggacg
tatctactggagaagtcacgggtcgtcttccaggcttcttcagagaggaactaccacatc
ttctaccagctgtgtgcctccagagagctgcctgaaatgagatccctcaaactggatgca
cctgagaatttccgctacaccaatcagggaggagagatgcagattcctggtgctgatgat
gtgtcagacctggagcgcactcgcaatgctttcaccatcctgggtgttcagcctggccag
cagatggagctcttcaggatcctctcagctattctacacctgggaaatgccaacatccaa
gccagtgggagaagttctgataagagttatattgatgcagatgaccgctccctggccgtc
ttctccaagctacttggagttgagggacctcagatggctcactggctgtgtcatcgcagg
ctggctgtagggggagagatgctggtcaaaccgaggtctgggcagcaggccgtagtggcc
agagatgctctggctaaacacatctacggccagttgttcacatggaccgtccagagactt
aactctgccctgcgctcccagaggggacagaccagatcattcataggggtactagatatc
tatgggtttgagacctttgatcggaacagttttgagcagttctgtataaattatgcaaac
gagaagctccagcagcagtttaacaggcacgtgttccacttggagcaggaggagtatgtc
cgggaggagctgccctggagcaagattgaattcagtgacaatcagcagtgcatcaacctc
gtcgagggacaactgggcctgtttgatctgttagatgaggagtgcaggatgcctaaaggc
tcagacgagagctgggtgcggaagctgtacgaccaacacctgaccagcaagccccaccct
cacttccagaaacctcgcatgtcaaacagcgccttcatcgttctgcactttgctgacctg
gtgcagtatgaatgtgaaggatttttagacaagaatcgagacacagtctatgaggagctt
gttaatatcatgaaagcgagtcagtctgagcttgtggccgagttgtttcagcagcaggag
aacgtgtcctctgtggccaatgggagtgttcgctcagggaaaagagcgaccagagagcac
agactgactgtgggcttccagttccgtcagtccctacagatgctgatggacaccctcaac
agcaccacccctcactacgtccgctgcatcaaacccaacgacctcaaagagccgttcatg
tttgaccccaagaggacagtgcaacagctgagagcctgtggggtgctggagaccattcgt
atcagtgctgcaggttttccttccagatggacgtacgaggagttcttcagcaggtaccgc
gttcttcttcgagggcctcagagtctggagcaggcgcaagcctcgtgtcgacggactctg
cctcagatcatctcagacccggaccagtactgcttcggaaagaccaaggtctttttcagg
gccggtcaggtggctctcctggagaggctgagggctgagaggctgcgtgaggctgctgtg
gtcatccagagccgggttagaggatggctgtcacggatcagattcaccagggtcctctgg
gcaactgtcatcatacagagatacagcagaggagctctggccagacgactggccctgacc
ctgcgctacaccaaggctgccttagtgatccagaagatgtaccgcatggtggtggtccga
cagctgttcctcatgatccgccaagccactgtcaccatccaggccttcaccaggggcaca
ctggcacgccgcacatacagacagttggttgcagaacgtgccactgtgttgcttcaggcg
agagtgcgtgggtggttggcgaggcgggcgtacaggcgagtgcgtgcggcggtggtgttc
atgcagtgctgcgtgcgccgcagggctgccaggagaaggctgctgaaactgaagaccgag
gcccgctctgtggagaagtaccgagagctcaacaagggcatggaggtcaaactgatgcag
ctgcagctacgagccgaccaggaggccagaaagagggctgctctgaaagggaccctgcat
gcagagcgagaggccgccactgctgagctggaggctctgaggctgatcatacagagactg
gagagccagaaacaggagaggcctccgccctgctcagacatcagtgagaagaaggaagag
aagaggaggagagccgaggacaaagctgctcaggagatcctgcagctcacacaagagttg
caaacgctgcagagagaaaaagatgattttagcaaagagagagacgaactctctgctcgc
tcacttgaacaagaaaaagctcaagaggagtgtgtccatcaggctgtgtcccaggcgagt
gcggctctgagggtggagctggatgaagagaggagaaagtaccagggcctcctgagagag
ttcacccgactggagcacagatacgacaacctcagagagatgagtctgctcactgagcgc
accagtggccacaggaggacagactccacccagagtctgagctttgagcctccctcaccc
accctactgtcaccccagtccctcacccctctccccctgtcaccattcccgtttgccttc
ccctctcctgaggaggtgcgcggggtcattgggacgtctccctgccgggagaggacactc
tctgtgtgtagctcagaaacaacaatggactcgttgatggagaagatggacgtggccaaa
gacccggcggtgaagatgagaggagaggacctggcacacgcctacgacgccgtacgagtg
gccaacaagttcctggagagtcagctgcgtaaccagcgcagtcagtgggaggaggagctg
gaggctctgaggcatcaagcatcctctgcttcttcctctgcatcacagccacaggagctg
caggagctgctggaggccagagagcaagagtgtgtcagactgaggagtgagctgaaggag
ctgagaaacaccgtgtcactcagacgactcctcactcaagtttttccatcagctttgagc
gcagagagctcgtcctgtccgtcccaacagaagccagcagcagtctctggtctgctggag
tgtaggaagagagacgaagcaaagctcatgaagaacctcatcacagacatccgtgtggac
actgccctgtccctgcctcccggtctccctgccatcgtgctttccctgtgtgtccgccag
gccgactgcagcagggaccagactcacgctcgctcgctctgtagcactgctgtcactgct
gtgaaggcagctctgaagaaacataacaacaatatagacatgacagctctgtggctgaag
aatgtttgtgtgttgcacgacctgctgacccagcactccccaaaacagacccttgattca
actgaactggctccactgacgagcgacctgagcgacctgattcacgccctgagcgacctc
tgcatccaggcctatcagcagctcctctccatcactgagacacgcctgcagaacatcata
gtccccgccatgctggagtctgagaccatccctggtctctctggctcagctgtgaagttg
ggtgcatccaggaagcgagccggctcggaccccaggactgcagcaggtgttgctcccacc
atagcgtcggtgctgagggagctgggagtccttcacgctgccatgacccatcaggctctg
cccgcaccactgatggaacaggcctttcaccagctcacctacctcatctccgcttccgct
ctgaacagcctgctgctgcggaaggacatatgctgctggaatcgtggcatgcagatacgc
tacaatctgagcctgttggaggagtggctgcgtagccgtaatctgcaggcagggggcgct
gtggccacgctggagcctctgatccaggcagttcagcttctgcagactgggaaaaaaact
gaggcggaggcacaggccctagttcagacctgcagtgcactgtccagccagcagatagtg
aagattctgaccctctacactcctcacagtgaccttgaagaaagagtctcactgaatttc
atccgtactgtccaggggcttctgaaaggccgctctgactcgcagcctccgcagctctta
ctggacgtgaggcgagtgtttcctgtcactttcctctactcgcctcccaccgggctccac
gctgagcagttagtcatcccagacgccctcaagatttcctttctacgcagagtctag
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