Hippoglossus stenolepis (Pacific halibut): 124854844
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Entry
124854844 CDS
T08308
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124854844 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
124854844 (pcf11)
03019 Messenger RNA biogenesis [BR:
hsp03019
]
124854844 (pcf11)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124854844 (pcf11)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124854844 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
124854844
NCBI-ProteinID:
XP_047199337
LinkDB
All DBs
Position
15:complement(24507380..24518841)
Genome browser
AA seq
1554 aa
AA seq
DB search
MEDSAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLTFAKDIVAIIEAQISKAPAA
EKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEKVDENLRKSLFKLRSTWDEVFPL
KKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPKFLKQSEEASSPQPVPSQPPAPVSAA
VVAPAPQPVPAVSQSSVTQEQLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAGGFTIP
TPPPASSPAAPTMTPKALSQNAPVVRPWIPPQTQPDTKTSTRDPRLNRTGPPAASQPKEQ
PAGKKDSLQKGSPALTPEKRQLEKSFRPEKTRTPRKETLEEKTKSKSLSPMTKSVQSKNK
QAEAEGQKSSDGSKKDPRLRKRTQDKSGESKDEELKEKKRCNDKKEREEAVLGAELQRFS
KGKLANGFVIKHEREEAEKVEFKSGGNARTHARKRTRSRSRSPTSSPKRKDRRSPKGRAR
SSSLSPSPSHKPGKPRRVRVDEPLHGKPGRDDRVTLKKSQSESRRSKRPQDDRHSESRDS
HSPRSHDGSGKETKEAPHRWRSGWEENKHLKLPDDAHMKPGPQRHKPYNTPTRPTTPRTL
KHRLSVDANLQIPEALNTASKKDLLRRAGKRLESGEISQEDFLNVAHQIKHFFQYQEEKL
QRSESWDGKQPLLAAPSSQPHDAMDAAELSYYEHKSKLRKTQVTHRVAGEEWEGEENVED
VDVTGPGEKTGGGRSIGGHPPPLKYSRAPRDRQGERRSKEREESRPPLGPMIEEYNHGKE
FPTLKSLPGLRFRRRADPRDSSEREWNSPLTERQRDEQKSGYDTPRRYTPSVDSRHPDPR
RPEGPLPSGTVVHRNCPSPTGLDAPVPRFERERLSPLHQKDSAEMSPVPRFESPNSEHSD
EGPLKPDVPPPQPTPPPILKAPARVGPLSSVRQQSNSPGHTPPHEAGHPPSRYDGPEHIA
PPRPHPPGWYDDSSQFEGPHPQGPGRFDGGRPPHHNIPERFDGPDGAHMPHGPMRGGDGM
GRFDVHPHPQGPGRFDGPMGQQPPVRFVGQGPGHFEGPMQHFEPPRRFDNNMAPGPGPMG
FQQQRALRFEGPPNQMGPMRFEGPNHRYDIPNVPHQGGHTHFEGPPGQQGPPRFPPQHNM
QPPMRPMAPPIYDNPMTPQQNFNMGPQCFPEPMNPQFPAGPMAFPAQTVNFNLQPPFSQP
GPAPFYNPAAPAVGLPQPVNLLGNMNQTFLPQNSVPFRPQTPQVVPPENHFGQVDVNDLL
TKLISTGIIKPSQPEATPTTSNESSTTVAPAAPPAEEEEEEEQEVEEEEDIPDLTSFTVD
DMKPRYECVVMKLYSGNQCCLCSMRFTTTQTDLYADHLDWHFRQNHAGKVASKKITHRRW
YYNLKDWIEFEEIADLEERVKSHFFEKENEEEVQKSQAAAKEREVQIVRATKDQVGELCE
ICQEPFETYWVEEEEDWFLKDAVRVDDKNFHPACFEDYKNTSSYLDVTPSPNKLLTDHPL
SAFVEPKEEEETSCCNAAASVKQEVAPEAVELLDVKKEEAELLIDQVQSEENNV
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagcgcggccagagaagacgcctgccgggagtaccagtcctccctggaggac
ctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggccgaggagaacctg
accttcgccaaggatatcgtcgcaataattgaagctcaaatcagcaaggcccccgctgct
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttggaggagagtac
cttgctgtgtttgctaaaaacctaatcacttcatttatatgtgtctttgaaaaggtggat
gaaaacctcagaaagagtctgtttaagctgcgctccacatgggacgaggtgttccccctg
aagaagctgtatgcgctggacgtgcgcgtcaactcagtggacccggcgtggcctatcaag
cctttgccgcccaccgttaacgccagcattcatgtcaaccccaagtttttaaagcagtct
gaggaggcctcctctccgcagccagttccctcccagcccccggcgccggtgtcagcggcg
gtggtggcgcctgctccccagccggtcccagcggtcagccagtccagcgtgacccaggag
cagctcatccgacagcagctgctggccaaacagaaacagcttctggagcttcagcagaag
aagatcgagctggagctggagcagaccaaagctcagctggccggaggattcacaataccc
acaccgcctccagcctcctctccagctgctccgaccatgacgccaaaggccctcagccag
aatgccccagtggtccgaccctggatccctcctcagacccagcctgacaccaagacgtcc
accagagaccctcgtctgaaccgcaccggccccccagctgcgtcccagcccaaagaacag
cctgctgggaaaaaagacagtctccaaaaaggaagtcctgccctgacgcctgagaaacgg
cagctggagaaatccttcagaccggaaaagaccagaaccccaaggaaagaaacgttggaa
gagaagaccaagtccaagtctctgtctccgatgaccaaaagtgtccaaagcaaaaacaaa
caggctgaggctgaaggtcagaaatcatccgacggctccaagaaagatccacggctgagg
aaacgcacacaggacaagagtggagagagcaaagacgaggagctgaaggagaagaagaga
tgcaacgacaagaaggagagagaggaggcggtgctgggggcagagctgcagaggttcagc
aaagggaagctggcgaatgggttcgtcatcaaacacgagcgcgaggaggcagagaaggtc
gagttcaaaagtggaggcaacgccagaacacatgccaggaagcgcacccgctccaggtct
cgctcccccacctcctctccgaagaggaaggataggcgctcgcccaaaggcagagccagg
agcagctcgctgtccccgtcaccctctcacaaaccggggaaaccccggagggtccgtgta
gatgaaccgctgcatggcaagcccggccgagatgaccgggtcacactcaagaagagccaa
tcagagagcaggaggtcgaagagaccgcaggacgatcgacactccgagtccagagactct
cactcgccccgaagtcacgatggaagtggcaaggagacgaaggaggctcctcatcgctgg
aggagcggctgggaggagaacaaacatttgaagttgccagacgacgctcacatgaagcct
ggaccccagagacacaaaccgtacaacacgccgactcgacccaccaccccccgaacccta
aagcaccgcctcagcgtggacgccaacctgcagatacctgaagccctcaacaccgcctcc
aagaaggacctgctgaggagggccggtaaacgtctggagagcggcgagatttctcaagag
gacttcctcaatgtggcgcaccagataaaacatttcttccagtatcaggaggagaagctg
cagcgctcagagagctgggacgggaaacagccgctgctggccgcgccctcctcccagccc
cacgatgccatggacgccgcagagctgtcgtactacgagcacaagtccaagctcaggaag
acgcaggtcacccaccgagtggccggagaggagtgggagggcgaggagaatgtggaggat
gtcgatgtaacaggcccgggcgagaagacaggtgggggtcggagcattggaggacaccca
ccgccacttaaatacagccgagcgccacgagacagacaaggtgaaagacggagtaaagaa
cgagaagagtcgcggcctccgctcggccccatgatcgaagagtacaaccatggcaaagag
ttccccaccctcaagtcgctgcctggccttcgcttcaggagacgagccgacccccgagac
tccagtgagagagagtggaactcgccgctgaccgagcgccagcgcgacgaacagaagagc
ggatacgacactccacggaggtacacgccctctgttgactccaggcatcctgacccccgg
aggccggaggggcccctgccctccggcacagtggtacacaggaattgtcccagtccgacc
ggtctggacgcccccgtcccgaggttcgagcgcgagcgcctgtcacctctacaccagaaa
gactcggcagagatgagcccggtcccgcgctttgagagccccaacagtgagcactctgat
gaagggcccctcaaacctgatgtcccccctcctcagcctacccctccccccatcctcaag
gccccagcgcgtgttggaccactgtcgtctgtccgacagcagagcaactcgcctggacac
acccctcctcacgaagcagggcacccgccgtcccgatatgacggccctgaacacatagcc
ccccccagaccccacccgcccggctggtacgatgactcttcacagttcgaagggcctcac
ccccaggggccaggcaggttcgatggcggcagaccaccacatcacaacataccagaaagg
tttgatggcccagacggcgcccacatgcctcacggtccaatgagaggcggagacgggatg
gggaggtttgatgttcacccccatcctcaaggccccgggaggtttgatggtcccatgggc
caacagcccccagtgcggtttgtgggtcaggggccgggacattttgaagggccaatgcag
cactttgaaccaccaagacgctttgacaacaacatggcccctggacctggaccaatgggc
ttccagcagcagcgggctttgcgtttcgaaggccctccaaaccaaatgggccccatgagg
tttgaaggccccaatcacaggtatgacatacccaatgtaccccatcagggtggacacacg
cactttgagggcccccctgggcagcaggggccccccaggttccctccccaacacaacatg
caacctcccatgaggccaatggccccgcccatttacgacaacccgatgaccccccagcag
aacttcaacatgggcccccagtgtttcccagagcccatgaaccctcagttccctgcgggg
ccaatggcgttcccggcgcagacggtgaactttaacctgcagccgccattttcccagccg
ggccccgcccccttctacaaccctgccgcccccgctgttggcctgccgcagccggtgaac
ctgttggggaacatgaatcaaacgttcctgcctcagaactcggttccattcagacctcag
acgccgcaggtcgtccctccagagaaccacttcggtcaggttgacgtcaacgaccttctg
accaaactcatctccaccggcatcatcaagccttcgcagcccgaggctacgccgaccacc
agcaacgaatcttcgaccactgtggcgccggcggctccgccagcagaggaggaggaagag
gaggagcaggaggtggaggaggaggaagacatcccggacctgaccagcttcaccgtggat
gacatgaaaccgcgttacgagtgcgtggtgatgaagctgtactcggggaaccagtgttgt
ctctgcagcatgaggttcaccaccacccagacggacctgtacgccgaccacctcgattgg
cacttcagacagaaccacgccggaaaggtcgccagcaagaagatcacacaccgccgctgg
tactacaacctcaaggactggatcgagttcgaggaaatcgccgacctggaggaacgagtg
aagagtcacttctttgagaaagagaacgaggaggaagttcagaagagtcaggcagcggca
aaagagagggaggtccaaatcgtcagggcgaccaaggaccaagtgggagagttatgtgaa
atctgtcaggagccgtttgagacgtactgggtggaggaggaggaggactggttcctgaag
gacgccgtccgagtcgacgacaagaattttcatccggcatgttttgaagattataaaaat
acgtcgtcgtatctcgacgtcacgccatcgcccaacaagctgctcaccgatcacccgctt
agcgccttcgtcgagcccaaggaggaagaggagacttcctgctgcaacgccgccgcctcg
gtcaaacaggaagtggcacccgaggccgtggagctactcgacgtgaaaaaagaggaggcg
gagcttttaattgaccaagtgcaatcagaagagaataatgtgtaa
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