Hippoglossus stenolepis (Pacific halibut): 124854924
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Entry
124854924 CDS
T08308
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124854924 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
124854924 (nup98)
03036 Chromosome and associated proteins [BR:
hsp03036
]
124854924 (nup98)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124854924 (nup98)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124854924 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
124854924
NCBI-ProteinID:
XP_047199640
LinkDB
All DBs
Position
15:24575216..24596673
Genome browser
AA seq
1824 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGNASTFGQQNTGFGAAGGFGASTFGTTTNTGGLFGSTQNKPGG
LFGSSTFSQPAASSTSTGFGFGAASGTSTSLFGNTGTGTTSGLFSQQNNAFSANKPTSFG
SFGTSTSSGGLFGATNTASNPFGGTNSLFGGAGFSAAQQPGTTVKFNPPTGSDTMVKAGV
TTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGQTNQMAAATGSLFSATAAAPSATT
GLFGSTAPNTSFSFGQNKGTFGAAAPGGFGATTGGLFTQPAQQPAASLFKPFGQTTTAPN
TGFSFGNTNTMGQANTSTMGLFGNTAAPQAGGLFGTAQTSTAAGFGTGTGLFGQTNTGFG
NVGTQQSLFGNKTAGFGTTTTSAPSFGTGTGLFGNKPALTLGTGTNTSTFGFGTNPAAGS
LFGNKPATGGLGTGLGTSFGAAVGPGQTSLFGNNQNKLGTTLGTMGTFGTTAFNSGTSTM
GFGAPQQPVALTDPSAAAAQQAMLQQQLSVLAYSPYGDSPLFRNPLSDPKKKEERLKPTN
PTAQKALTTPTHYKLTPRPATRVRPKSLTSSGSSKSQLFDGLDDDEPSLTNGAFVPRKSI
KKLVLKNLNSSQYSSQPETETDDLASPPEYPQNGHSLMEEEEEELGGTSSQADDDPEVTQ
FYVNPIAKPIPQGRAQTTLQDTISDLNMHKAARNGLELSSDDLLASLGEESLQEEREDEQ
QEIQQSPHPAGIVLNRVGYYTIPSMKDLADMTDEHGECLVENFTIGRKGYGSIFFPGEVN
VSGLNLDEIVHFRRKEVIVYPDDKNKPLEGEGLNRRAEVTLDGVWPNDKTTCTQIRSPER
LSDMNYEGRLEKASRKQGARFLEYRTETGSWVFEVAHFSKYGLQDSDEEDDIPLKTDPKK
LKTMMSLPPSKLQQQLPPSQHQVAPQAQSTVVDLPSGVAELDSDMADITQSFPTESLLGG
EEDSDLPGETDTTCGKLGGLTSAELDGISASSHIASTLGINPHTLQIMKASLFAEDEEES
DLFQGRGAMKVSTDVSSPRIVLPGAQSRSSVGGLLQARFTSGLLSQLSDSPQPPLSRADT
PRSLHWAAQGPSFLLPPRTPEPSIRTVGVRRMGGPVPLKESVTLGKGGLLMDVGLFKGRS
FRVGWGPGWTLAHCGDRLSSLGSKQLDHKDLSSKTDFSFLPKPARNKPLVESPYKVTLEQ
LVGLEPQVMKTGEGEEEESQTVLQRPLEICLEHSIISITDSVPCPLVRPQTGVAALHEYA
KWITELNDTQGDADPLLGHWAEVWTLCEALWGRLGPAHQEPDIETPSDYEQQLERRRTFS
AWLSRGATSRVEEEVALAGKGRHTEAIFSYLTGNRISEACRVAQREGDHRLSLLLSQALG
SQYCRDLLALQLADWNRMQTDSYLPEERLRIFTLLAGKPVWQSSDSVVNVCSQLDWKRCV
AVHLWFMLPPTASMADALAKYEAAFQGSCEGGKYACAPLPPYLEAEKMDVEEEEEESKRP
LYDLCFHLLKLYSDRHYSLQQLLDPLTVTWERLDYRLSWHLWGVLQSLHYSHLSASRQGL
LHASYAAQLESAGLWHMAIFILLHIPDHAQRERAVREMLTLHCPLQETDESVRRERFLTE
RLLIPEQWIHEAKATRAHRDANRHQEALHLYRAGYWNQCHRLLIQHLASDCIINDNHDYL
LEFLEGLAVPEHSTSIQDWDTAGRVYLDYIRVIKTLQDIQQMENAGYELERLYTDVTSLC
GRIELLPCRTARDRLAQSEMAKRVSNILRAVLSLQQGDAASDSLSIPLAQLAPHITRLPM
PEDYTLEELRGLTQSYLRQLIISQ
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcattcgggactccgttcggtggaggaacagggggattcggcaacgcg
tccaccttcggacaacaaaacacaggctttggggcggcaggaggatttggggcttctacg
ttcgggacgaccaccaacactggaggactgtttggttccacacagaataaacctggcggt
ctgtttggatcgagtacgttcagtcaaccggcggcttcctccactagcaccggcttcggc
ttcggtgcagcgagcggcacctctaccagcttgtttggcaacacgggaacaggcaccacc
agcggactcttctcccagcagaataatgccttcagtgccaacaaacccacatcttttgga
agctttgggacgagcaccagcagcggcgggctcttcggagccaccaacactgcctccaac
cccttcgggggaacgaactctctgttcggaggcgctgggttctccgcagcacagcagccg
ggaacaaccgtgaaattcaaccctccaacaggaagtgacacgatggtgaaagctggtgtg
accacgagcatcaacaccaaacaccagtgcatcacggccatgaaggagtacgagaacaag
tccctggaggagttgagattcgaggattaccaggcgggcaggaaaggacagaccaatcag
atggctgcagcgacgggcagcttgttcagtgcgaccgcggccgcgcccagtgccaccact
ggcctgtttggctccacggcccccaacaccagcttctccttcggacagaataaaggcacc
ttcggagcagcagcgcccggcgggttcggtgcgaccacaggcggccttttcacacagccg
gcacagcaaccagccgccagcctcttcaagccgttcggtcagacgaccaccgcgccgaac
accggcttctccttcggtaacaccaacaccatgggacaggccaacaccagcaccatgggt
ttgtttgggaacacggcagcgcctcaggcgggtgggttgttcggcaccgctcagaccagc
accgccgcaggcttcgggaccggcactgggctgtttggacaaaccaacaccgggtttgga
aacgttggcacacagcagagtttattcggtaataaaacggccgggttcggcaccaccacc
actagcgctccctccttcggcaccggcactggactctttggcaacaagccggccctcacg
ctgggaaccggaaccaacacctctacctttggtttcggaacgaatcctgctgcagggagt
ctgtttggaaacaaaccggccactggtggactgggcactggactgggaaccagctttgga
gcagcagtgggaccaggacagacgtctctgttcggaaacaaccagaacaaactgggaacc
acgctgggaaccatgggaacattcggaacgacagcattcaacagtggaaccagcacgatg
ggattcggagctccacagcaaccagtcgcgctcactgatcccagcgcagcggcggctcag
caggccatgctgcagcagcagctcagcgttctggcgtattcaccgtacggagactcgccg
ctgttcagaaacccgctgtccgaccccaagaagaaagaggagcgtctgaaaccaaccaat
cccacggcccagaaggctctgaccacacccacccactacaagctgacccctcgacctgcg
accagggttcgccccaaatcgctgacatcatccggctcctccaagtcgcagctcttcgac
ggccttgatgatgacgagccctcgctcaccaacggagccttcgtgcccagaaagagtata
aagaaacttgtgttgaagaacctgaacagcagtcagtacagcagccagccggagacggag
acagacgacctcgcttcaccccccgagtatccacagaacggacacagcctcatggaagag
gaggaggaggagctggggggcactagcagccaggcggacgatgacccagaggtcacccag
ttctacgttaaccccatcgccaagcccatcccacagggccgcgcccagaccaccctgcag
gacaccatcagtgacctgaacatgcacaaagcggcgaggaacggcctggagctgagcagt
gatgacctgttggcatctctgggggaggagtctctgcaggaggagcgagaggacgagcag
caggaaattcaacagtctcctcatccagcaggcatcgtcctcaaccgtgtgggttattac
accatcccctccatgaaggatctggctgacatgacggacgaacacggagagtgtttggtg
gaaaactttaccatcggcaggaaaggttatggctccatcttcttccctggtgaggtgaat
gtgagtgggctgaaccttgacgagatcgtccacttcagacgcaaggaggtcatcgtgtac
ccggatgacaaaaacaagccattagagggggaggggcttaacagacgagccgaggtcacc
ctggatggggtttggccaaatgacaaaacgacctgtactcagatcaggagccccgagcgt
ctgtccgacatgaactacgagggtcggctggagaaagcctcgcgcaaacagggagcacgt
ttcctggagtacagaactgagacggggtcctgggtgttcgaggtggcccacttctcgaag
tacggcctccaggattctgacgaggaggacgacatccctctgaaaaccgaccccaagaag
ttgaagaccatgatgtcacttcctccctccaagctgcagcagcaacttccgccctcccag
catcaggtggcgccacaggctcagtccactgtcgtggatcttcccagtggcgtggcggag
ctggacagcgacatggccgacatcacccagagtttcccgacagagagcctgctgggaggg
gaggaggacagcgacctgcccggggagacagacacgacatgcgggaagctcggaggtttg
acctctgctgagcttgatggtatctctgcgtccagccacatcgcatcaacgttgggcatc
aacccgcacacgctccagatcatgaaggcgtccctgtttgctgaggacgaggaggagagt
gatttgttccagggcagaggagcgatgaaagtttccactgacgtctcgtcccctcgcatc
gttctgcccggagctcagagccggtcctctgtggggggtcttcttcaggctcgttttacc
tccggcctcctctctcagctctcggactctcctcagcctcctctgtcccgggcggacacc
ccccgctcattacactgggcagcacagggtccctccttcctactgcccccccgaactcca
gagccgtcgatcaggacggttggcgtgcggcgcatgggcggccctgtccctctcaaagag
tcggtcactttggggaagggaggtttgctgatggatgtcgggctgttcaagggtcggtcc
tttcgtgttggttggggtcctggctggacgctggcgcactgtggagaccggctcagttcg
ctgggctctaaacagctcgaccacaaagacctgagctccaagaccgacttcagcttcctg
ccaaaacctgccaggaacaaaccactcgtggaaagcccctacaaagtgacgctggagcag
ctggtcggtctggagcctcaggtgatgaagaccggggagggagaggaggaagagagccag
acagtgctgcagcgccccctggagatctgcctggagcacagcatcatcagcatcacagac
tccgtcccctgccctctggtgcgaccgcagactggtgtggcagcgctgcacgaatacgcc
aagtggatcacagagctgaacgacacgcagggtgacgcagaccctctcctgggccactgg
gccgaggtctggaccctgtgtgaggctctttggggccggctgggccccgcccaccaagag
ccagacatcgagacgccaagtgactatgagcagcagttggagagacggcggaccttctct
gcctggctgtcccgcggcgccaccagcagggtggaggaggaggtggctctggccgggaag
ggtcgccacacggaggccatcttcagctacctgacgggcaaccgcatcagtgaggcgtgt
cgagtcgcacagagggaaggtgaccatcggttgtcgctgctgctgtctcaggccctgggc
tctcagtactgtcgtgacctgctggctcttcagctcgccgactggaaccggatgcagact
gacagctacctaccagaggagcgacttcgcatcttcacgctcctggcagggaaacctgtg
tggcagtcgtcggactccgtggtgaacgtctgctcacagttggactggaaacgctgcgtg
gctgtccacctctggttcatgttgcctccgactgcctccatggccgatgccctcgctaaa
tatgaagctgccttccagggctcatgtgagggggggaagtacgcctgtgcccccctgccg
ccgtacctggaggcggagaagatggacgtggaagaggaggaggaggagtctaaacgacct
ctgtacgacctctgtttccacctgctcaaactctacagtgacagacactacagtctgcag
cagctgctggatcctctcaccgtcacctgggagcgtctggattaccgtctgagctggcac
ctgtggggcgtcctgcagtcgctgcactacagccacctgagcgcctcacgccagggactc
ctccacgccagctacgccgcacaactggagagcgccggcctctggcacatggccatcttt
atcctactgcacatccccgaccacgctcagcgggaacgagccgtcagagagatgttgacc
ctccactgccccctgcaggagactgacgagtctgtccggagggagcgcttcctgacggag
agactgctcatcccagagcagtggatccacgaggccaaggccacgcgagcacaccgagac
gcaaacagacaccaggaggcgctgcatctgtaccgggccggatactggaaccagtgtcac
cggctgctgatccaacatctggcttcagattgcatcatcaacgacaaccacgactacctg
ctggagttcctggaggggctggcggtccctgaacacagcaccagcatccaggactgggac
actgcagggagggtttacctggactacatcagggtcatcaagactctgcaggacatccag
cagatggaaaacgctggttacgagctcgagcgtctctacaccgacgtgacgtctctctgc
ggcagaatcgaactcctgccctgcaggaccgccagagaccggctcgcccaatcagaaatg
gcgaagcgtgtttccaacatcctgcgtgcggtgctgagtctgcagcagggcgacgctgcg
tccgactccctcagcatcccgctggcccagctggcgccacacatcacccgcctcccgatg
ccggaggactacacgctggaggagctgcgaggcctcacgcagtcgtaccttcgacagctc
atcatcagccaatga
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