Halomonas sp. A40-4: IT895_02580
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Entry
IT895_02580 CDS
T11047
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hspe Halomonas sp. A40-4
Pathway
hspe03030
DNA replication
hspe03430
Mismatch repair
hspe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hspe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IT895_02580 (dnaE)
03430 Mismatch repair
IT895_02580 (dnaE)
03440 Homologous recombination
IT895_02580 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hspe03032
]
IT895_02580 (dnaE)
03400 DNA repair and recombination proteins [BR:
hspe03400
]
IT895_02580 (dnaE)
Enzymes [BR:
hspe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IT895_02580 (dnaE)
DNA replication proteins [BR:
hspe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IT895_02580 (dnaE)
DNA repair and recombination proteins [BR:
hspe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IT895_02580 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Herpes_IR6
tRNA_anti_2
OB_POT1A
Motif
Other DBs
NCBI-ProteinID:
QPL46719
LinkDB
All DBs
Position
530203..533706
Genome browser
AA seq
1167 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAEREMPALALTDEANLFGLVKFYKAAQGAG
LKPIIGSDLWLHNPHDEAHPYRLTLLAMNDIGYRNLTELISRGWTDGQRQGRAILDKQWV
LSQSEGLIALSGARDGEIGRHLLSDHEREARGLLEEWQQAFPDRFYLELIRTGRPLEEDC
VHASVKLAIDTQTPVVATNDVRFLERDDYWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPAEMAELFADIPEALENSVMIAERCSVDVRLGEIFLPEFEIPEGMTQDEFFRKISHDGL
TDRLDFLYPAERYPRDGDEYKAIDQRYRERLDFELNIIIQMGFPGYFLIVMDFIQWAKDN
NVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IEYVADRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGMTLDKA
IEQEAALKEFIDSDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLMVQFDKNDIEDAGLVKFDFLGLRTLTIIDWALEMVDKVREANDQGPLNIDAIPLDDG
KTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHELLKTVLAPTYGIILYQEQVMQIAQVMAGYTLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDIEGRVVYG
LGAIRGVGEGPIGAIVDAREAGGAFSDLFDFCKRIDPKRMNKRTLEALIRSGALDNLGPN
RAVLAAAMEDALKAAAQNHTNQNLGMLDMFGEAFAAEEEAVDVYAEYRHVREWTDRERLS
GEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKASWEPQRIAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFEQLRGQIAADEVVIIEGEVSNDDFSGGLKLRGKDVTPMV
AARARFGQAVELALDAQQLNGRLVESLRASLSPFRDEAGLPVRLQYRHPDAVGWLELADE
WKVAPSDDLLLTLRDVQGQVGVQLRYK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgttcgttcatctacgtttgcacagtgaatattccctggtcgatggcttg
gtcaagctcaagtccctggtcagcacgaccgctgagcgcgagatgccagcgctggcgctg
accgacgaagccaacctgtttggtctggtaaagttttataaggctgcccagggcgctggt
ctgaagcctattatcggcagcgacttgtggctgcataatccccacgacgaggcgcacccc
taccggctgacgctgctggcgatgaacgatatcggttatcgcaatttgaccgaactgatt
tccagaggctggaccgacggccagcggcagggccgtgccattctggataaacagtgggtg
ctttcacaaagtgaaggactgattgcgctgtctggggcgcgcgatggtgaaataggccgc
cacctgctttccgaccacgagcgcgaagcacgtgggttgctggaggagtggcagcaggcg
ttccccgaccgtttctaccttgagctcatccgcaccgggcggcccctggaagaagactgt
gtgcatgccagcgtgaaactggcgattgacacccagacaccggtggtggcgaccaacgat
gtgcgtttcctggagcgcgatgactattgggcccatgaaacacgcgtggcgatcggtgaa
ggcaaggcgcttgatgacccgcggcgcgagcgtcgctataccgaagagcagtatctcaaa
agccctgccgagatggccgagctgtttgccgacattcccgaggcgctggaaaacagcgtg
atgatcgccgagcgctgcagcgtcgacgtgcggctcggtgagatattcctgcccgagttc
gaaattcccgagggcatgacccaggacgagtttttccgcaagatttcccacgatggtctc
acggaccggctggattttttgtaccccgccgagcgttacccgcgcgacggtgatgagtac
aaggcaatcgaccagcgctatcgtgagcggctcgatttcgagttgaacatcatcatccag
atgggctttcccggttacttcctgatcgtgatggactttatccagtgggccaaggacaac
aatgttccggtagggcccggtcgcggttccggtgcgggttcactggtggcctacgcgcag
aagatcaccgaccttgatcccatcggttacgatctgcttttcgagcggttcctgaacccc
gagcgggtttccatgcccgactttgacgtcgacttctgcatggagaagcgcgaccgcgtc
atcgagtacgtggccgaccgctatgggcgtgatgcggtatcgcagattgtcacctttggc
accatggccgccaaggcggtggtgcgcgacgtcgctcgcgcccagggcaagccctattcg
ctgggcgacaaactctccaagctgattccctttgaagtgggcatgacgctcgataaggcg
atcgagcaggaagcggcgctgaaagaatttatcgacagcgatgaagaagctgaagaaatc
tgggaaatggccctcaagctggagggcaccacccggggcaccggcaagcacgccgggggc
gtggtgatcgcgcctaccaagctcaccgacttttcgccgttgctctgcgatgaggacggt
tcgggcctgatggtgcagttcgataaaaacgatatcgaagacgccgggctggtgaagttc
gactttctggggctgcgcacgctgaccattatcgactgggcgctggaaatggtcgacaag
gtgcgcgaagccaacgaccaggggccgctcaatatcgacgccattcccctggacgatggc
aagaccttcgagatgctcaagcgtgccgagaccacggcggtgttccagctggaatcccgc
ggcatgaaggaactgatcaagcgcctgttgcccgattcactcgacgacatgatcgccctg
gtggcgctgttccgccccggcccgctgcagtcgggcatggtggacgactttatcaaccgc
aagcacggccgcgcggaagtatcttatccacaccctgattaccagcacgagctgttgaaa
acggtgctggctcccacttatggcatcatcctgtaccaggaacaggtcatgcagatcgcc
caggtgatggcgggctacacgctcggccaggccgacatgctgcgccgggcgatgggcaag
aaaaagcccgaggaaatggccaagcagcgcgccggcttcatggaaggctgcgccgccaac
ggcattgataaagacctggcgggcaatatctttgatctggtagagaagtttgctggttac
ggcttcaacaagtcgcactcggccgcctacgcactggtctcgtaccagaccgcctggctc
aaggcgcactacccggggcccttcatggcggcggtgatgtccacggaaatggacaatctg
gataaggttgtgccgctgattgaagagtgccgaaacctcaagctgacagtgaccccaccg
gacgtcaatgtgggcggctacaagttcaccgtcgacattgagggccgcgtggtatacgga
ctgggggcgattcgtggcgttggtgagggtccgattggcgccatcgttgatgctcgtgag
gcaggcggcgcattcagcgacctcttcgatttctgcaagcgtattgaccccaaacgcatg
aacaagcgcacgctggaagcgctgatccgctccggcgcgctggataatctgggaccgaat
cgcgccgtgctagccgctgccatggaagacgctctcaaggccgccgcgcaaaatcacacc
aaccagaacctgggtatgctggatatgttcggcgaggcgtttgccgctgaagaagaggcg
gtagatgtctacgctgaataccgccacgtccgtgaatggaccgaccgcgaacggctgtcc
ggtgagaaagataccctcggcctttatctgacaggccacccgattgacgagtacgagcgt
gaattaaagcgctttgtatcgacgcggatcagcgatttaaaagcgtcctgggagccccag
cgtatcgctggtttggtggtggccatgcgcaccatgaaatcaaagcgcggcgataccatg
gcgtttatcaccctggatgaccgcaccgggcgcatcgaggcctcgctatttggcgagctg
ttcgaacaattgcgtgggcaaatcgccgccgatgaagtggtgattatcgaaggtgaggtg
tccaacgatgacttctccggtgggctcaagctgcgcggcaaggatgtcacgcccatggtg
gcggctcgcgcccgctttggtcaggcagtggagttggcactggatgcccagcagctcaac
ggccgtctggtcgagagcttgcgcgccagcctgtcaccatttcgcgacgaggccgggttg
cctgtccgcctgcagtatcgacaccccgatgccgtgggctggctggaactggcggatgaa
tggaaggtcgcccccagcgatgatttgctgctcaccctgcgcgatgtccaggggcaggtg
ggtgtccagctacggtacaagtaa
DBGET
integrated database retrieval system
