Halomonas sp. A40-4: IT895_04880
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Entry
IT895_04880 CDS
T11047
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hspe Halomonas sp. A40-4
Pathway
hspe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hspe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IT895_04880 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hspe03400
]
IT895_04880 (recD)
Enzymes [BR:
hspe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IT895_04880 (recD)
DNA repair and recombination proteins [BR:
hspe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IT895_04880 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
SH3_13
Helicase_RecD
UvrD-helicase
AAA_16
nSTAND3
SLFN-g3_helicase
AAA_28
NTPase_1
PhoH
DEAD
NPHP3_N
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QPL47122
UniProt:
A0A7T0RGE8
LinkDB
All DBs
Position
complement(1020296..1022566)
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AA seq
756 aa
AA seq
DB search
MSGSQHDHHTPDLFGDAPEADQPSAPAQVNAHPALSDTVELLALCERWVARGWLRDLDRA
LVRFLATEAPDAPPLLLLGAALASHQLGRGHVCLDLNATLNAPDFALSLPPEGDDLTDPP
PLPSDVLATLTLTEWQAALGHPTLISQGLGNTPLVRSDSEHTTRLYLRRYWQYEQTLHQE
IANRLSGDEGVCRSQTCRAMGDDSHPELLPNALNVLFRKTTTLDWQKTACALAARNRFAV
ITGGPGTGKTTTVVRLLALLQTLQLAQSPTQPLRIRLAAPTGKAAARLNESIAGQVSLLP
TEALAELCDDAVTEQLQASIPTEVTTLHRLLGARPDTRHFRHNAANPLALDVLVIDEASM
VDIEMMTAVLSALPAQAQLVLLGDKDQLASVEAGAVLGDLCRRAEAAHYTPETAQWLENA
TGQPLPEHYLDPNGQPLDQAITMLRVSHRFNAESGIGQLAQAINQPSHAQSEREKHQAVH
GVLRHGYQDLHHLVLGSNAESREEDTALDKLVIHGSPDAFPNAGEGRTDHEGTPIAPPTG
YRHYLNMLKAQRPQGLAFEEDKEAYNDWASAVLSAYSHFQLLCALRKGPWGVEGLNLRIA
KTLRSEKLLYGSDHMLEKGWFEGRPVLVTQNDYGLKLMNGDIGITLAVPDPRTPGKSLLR
VAFPTNDPEKPINWVLPSRLHAVETVFAMTVHKSQGSEFLHTALLLPPTPNPILTRELVY
TGITRAREWLTVIEAKRGILNDAVTREVMRVSGVGG
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgagcggctcacaacacgaccaccacacgcccgacctgttcggcgacgcccccgaagcc
gaccagccaagcgccccagcgcaagtgaacgctcaccccgcgctaagcgacacggttgag
ctgctggcgctatgcgagcgctgggtcgcccgaggctggctgcgggacctggaccgcgcc
ctcgtgcgctttctagccaccgaagcgccggacgccccgccgctgctgttgctaggcgcg
gcgctggccagccaccagctcggccgcggccacgtgtgcctggacctcaacgccacgctc
aacgcgccggacttcgcgctttcgctacccccggaaggcgacgacctaaccgacccgccg
ccgctgcccagcgacgtgcttgccacgctaacgcttaccgaatggcaagccgcgcttggt
caccccacgctgatcagccaaggcctcggcaacacgccactagtacgcagcgacagcgaa
cacaccacccgcctctacctgcgccgctactggcaatacgaacaaaccctgcaccaggaa
atcgccaaccgcctctccggcgacgagggtgtttgtaggagccagacttgtcgggcgatg
ggtgacgatagtcaccctgaattactccccaacgccctaaacgttctatttagaaaaacc
accaccctagactggcaaaaaaccgcctgcgccctagccgcccgcaaccgcttcgcggta
atcaccggcggccccggcaccggcaaaaccaccaccgtggtgcgcctgctcgccctgcta
caaaccctgcagctggcccaatcgcccacgcaaccgctgcgcattcgcctggccgcgccc
accggcaaagccgccgcccggctgaatgaatccatcgccgggcaggtaagcctgctgccc
actgaagcgttggccgagttgtgcgatgacgccgtcaccgagcagcttcaagcgtctatc
cccaccgaggtgacgacgcttcaccgactattaggcgcacgccccgacacccgccacttc
cgccacaacgccgccaacccgctggcattggacgtgctggtgatcgacgaagcctcgatg
gtggatatcgaaatgatgaccgccgtgctcagcgccctgcccgcccaggcgcagctggtg
ctgctgggcgataaagaccagttggcatcagtagaagccggtgccgtgctcggcgacctg
tgccgccgcgccgaggccgcccactacaccccggaaaccgcccaatggctggaaaacgcc
accggccagccgctgcccgagcactacctggatcccaacggccagccgctcgaccaggcg
attaccatgctgcgggtcagccaccgcttcaacgccgaaagcggcatcggtcaactggcc
caggcgatcaaccagcccagccacgcccagagcgaacgcgaaaagcaccaggcggtgcat
ggcgtactgcgccacggctaccaggacctgcaccacttggtgctgggcagtaacgccgag
agccgtgaagaagacaccgcgctggataagctggtgattcacggcagtcccgatgcattc
ccgaacgcgggcgaaggccgcaccgaccacgagggcacgcccatcgccccgcccacgggc
taccgccactatctgaacatgctaaaagcgcagcgcccgcaggggctggcgtttgaggaa
gataaagaggcgtataacgactgggccagcgcggtactcagcgcctacagccactttcag
ctgctatgcgctctacgcaaaggcccctggggggtagaaggcctgaacctgcgcatcgcc
aaaacgctacgcagcgaaaagctgctgtacggcagcgaccacatgctggaaaaaggctgg
tttgagggccgcccggtgctggtgacgcaaaacgactacggcctgaaactgatgaacggc
gatatcggcattaccctggcggtgccggacccgcgcacgccgggtaaatcattactacgc
gtcgccttccccaccaacgacccggaaaaacccatcaactgggtgctgccttcccgcctg
cacgcggtagaaaccgtattcgcgatgacggtacacaaatcccagggctcggagttcctg
cacaccgcgttactgctaccgccaacgcccaaccccatcctcacccgcgagctggtctac
accggcatcacccgcgctcgtgaatggctcacggtcatcgaagccaagcgcgggatattg
aatgatgcggtgacgcgggaggttatgagggtaagtggggttgggggttag
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