Halomonas sp. A40-4: IT895_04885
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Entry
IT895_04885 CDS
T11047
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hspe Halomonas sp. A40-4
Pathway
hspe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hspe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IT895_04885 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hspe03400
]
IT895_04885 (recB)
Enzymes [BR:
hspe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IT895_04885 (recB)
DNA repair and recombination proteins [BR:
hspe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IT895_04885 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QPL47123
UniProt:
A0A7T0RGA5
LinkDB
All DBs
Position
complement(1022563..1026360)
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AA seq
1265 aa
AA seq
DB search
MSQPAPLDPLSLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHSDDDTAFVRPLTPPE
ILVVTFTNAATQELRERIRNRLVEAAEVFRAEGVEGGAPGVSRSGGHSTGMLNVAPTDGF
TAPPRRLAAGEAPVGLDPLLLQLRDQYDPATWPACARRLELAAEWMDEAAVSTIHSWCYR
MLREHAFDSGSLFSLDLENDQHELEQEVVRDYWRTFYYPLDAEALGHITRYWKSPGELHA
QVARLLPESEALGSQRPDPAETLSAAEAERQATLSTLKAPWPTWLDELVPALEDAAKRKA
FKGQSFNAKSRANWLGALREWSESDLERPALTPAAWKRLTPDGMAEIWKDGAPPCPAAWE
ALAELPEALNALPEPRNDLLIHAVQWCKVRLEREQERRAEMGPNDLLTHLDRALQGPNRE
ALAAQILRQFPVALIDEFQDTDPIQYRIFNAVFEVAKSRRDAAILLIGDPKQAIYAFRGA
DIFTYLQARQDTAGRHVTLGTNFRSSRAMVEAVNHCFAYADRQPAGAFLFREQGGDNPLP
FQPVTAKGRDEQLVHQGQPLPAMTLWPLESDEPLSKTAYQTEMAERCASYMTELLSAGQQ
AESGFQKDDQLTPLKPSDMAVLVNGLQEARAIRLALASRGVKSVYLSDHDQVFSSPMAAQ
VERWLRACAEPLASSRQAEAHLRAALATPVLGLTLADLDHLQQSELAWEERVEQFSHYHR
LWQRQGVLPLVRRMMVDFDIPARLLAEFEDGERLLTDLLHLGELLQQASQELDGEHALIR
FLYDAIADPDSHGDSHKLRLESDADLVKVVTIHKSKGLEYPLVFLPFIANHRPVKAGDVP
LRWHDGEGNLQLSLDADDATLATADRERLGEDLRKLYVALTRARHATWLGLAPLKGIEDS
AIGHLINGGKPLDPAALTAKLAELVEGSDIRVDAPPEPTALRLAPPQQTTTLGHARTPKR
PAKEHWWIASYSALRLSGTLTAPVTTPLEPTTAQEATAFEVLDEPQDLSQPEAFHLHKFP
RGPGPGTFLHGLLEWAGRQGFDAAASDAESLDDMLWRRVQLRGWQQWQEPLSGWLTALLT
TPLPLASQQSVALTELGSYQVELEFWLAAKQVNTQAIDALVSKHLLPGYERPALDADTLN
GMLKGFIDLAFEHQGRFYVLDWKSNYLGPDDSAYEPDALRQALLAKRYDLQAALYLLAMH
RLLKARLPHYDPHQHLGGSMTVFLRGSRSPGRGVYTETAPVALIEALDGLFTGTSFSTTP
GEATA
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcccgcaccactcgatccattgagcctcccgcttcacggcagccgactgata
gaggcaagcgctggcaccggtaaaaccttcaccatcgcactgctttacgtgcgcctggta
ctgggcggccagcatagcgacgacgacaccgccttcgtgcgcccgctgacaccgccggaa
atcctggtcgtcaccttcaccaacgccgccacccaggaactgcgagaacgtatccgcaac
cggctggtagaagcagctgaagtatttcgagctgagggtgtagaaggaggggcgccgggg
gtaagccgtagtggaggtcattcaacagggatgttgaatgtagcgcccacggacgggttc
acagcgcctccacgtaggcttgccgccggggaagccccggttggactagatccactactg
ctccagctccgcgaccaatacgacccggccacctggcccgcctgcgcccgccgcctggaa
ctggccgccgaatggatggacgaagccgcggtttccaccatccacagctggtgctaccgc
atgctgcgcgaacacgccttcgacagcggcagcctgttctccctcgatctggaaaacgac
cagcacgaactggaacaggaagtcgtccgcgactactggcgcaccttctactacccgctg
gatgcggaggcactcggccacattacccgctactggaaatcccccggcgaactgcacgcc
caggtcgcccggctgctgcccgaaagcgaggccctcggcagccagcgacccgacccggcg
gagaccctcagcgccgccgaggccgaacgccaggcaacgctgagcaccctgaaagccccc
tggcccacctggctggacgaactggtgcccgcactggaagacgccgccaagcgcaaggcc
ttcaaaggccaaagcttcaacgccaaaagccgtgccaactggctgggcgcgctgcgcgaa
tggagcgaaagcgacctggaacgccccgcgctgacgcccgccgcctggaaacgcctcacc
ccggacggcatggccgagatctggaaagacggcgcaccgccctgccccgcggcctgggaa
gcgctggccgagctgcccgaagcgctcaatgccctgcccgaaccacgcaacgacctgctg
attcacgccgtgcaatggtgcaaggtgcgcctggaacgcgagcaggaacgccgcgccgaa
atgggccccaacgacctgctcacccacctggaccgcgccctgcaaggccccaaccgcgaa
gccctggccgcgcagattctgcgccagttccccgtggcgctgatcgacgaattccaggac
accgaccccatccagtaccgcatcttcaacgcggtattcgaggtcgccaagtcccgccgc
gacgctgccatcctgttgatcggcgaccccaagcaggccatctacgcgtttcgcggcgcg
gatatcttcacctacctgcaggcccgccaggacaccgccggccgccacgtcacgctgggc
accaacttccgttccagccgcgccatggtcgaggccgtcaaccactgcttcgcttacgcc
gaccggcagcccgccggggcgtttttgttccgcgaacaaggcggcgataatccgctgccc
ttccagcccgtgaccgccaaaggccgcgacgaacagctggtacaccagggccaaccgctg
cccgcgatgacgctgtggccccttgaaagcgacgagccgctctccaagaccgcctaccag
accgaaatggccgagcgctgcgcctcgtacatgacggaactgctcagcgccgggcaacag
gcagaaagcggctttcagaaagacgaccagctcacgccgctcaagccctccgacatggcg
gtgctggtcaacggcctgcaggaagcccgcgcaattcgtctggcgctggccagccgtggc
gtcaaaagcgtctacctttccgaccacgaccaggtattcagctcgcccatggccgcccag
gtcgagcgctggctgcgcgcctgcgccgagccgctggccagctcccgccaggccgaagcc
cacctgcgcgcggccctggccaccccggtactgggcctgacgctcgccgacctggaccac
ctgcaacaaagcgagctggcctgggaagaacgcgtggagcagttcagccactaccaccgg
ctatggcagcgccagggcgtgctgccgctggttcgccgaatgatggtggatttcgacatc
cccgctcgcttgctggcggagttcgaggacggtgagcgcttgctaaccgacctgctccac
ctgggcgaactgcttcagcaggcaagccaggagctggacggcgagcacgcgctgattcgc
ttcctttacgacgccatcgccgacccggacagccacggcgacagccacaagctgcgcctg
gaaagcgacgccgatctggtcaaggtggtgaccatccacaaatccaagggcctcgagtac
ccgctggtgtttctgccgtttatcgccaaccaccgcccggtgaaagccggcgacgtaccg
ctgcgctggcacgacggcgaaggcaacctgcaactcagcctggacgccgacgatgccacc
cttgccaccgccgaccgcgaacgcctgggcgaagacctgcgcaagctctacgtcgcgctg
acccgcgcccgccacgccacctggctggggctcgcgccgcttaagggcatcgaagacagc
gccattggccacctgatcaacggcggcaagcccctcgacccggcggcactcaccgccaag
ctggcggaattggttgaaggcagcgacattcgcgttgatgcgccccccgagcccacggcg
ctgcgtcttgcgccgccccagcagaccaccaccctggggcacgcccgcacgcccaaacgc
cccgccaaggaacattggtggattgccagctactcggcgctgcggctttccggcacgctc
accgccccggtcaccacgccgctggaacccaccaccgcccaggaagcaacggcgttcgag
gtgctggacgaaccccaggatctcagccagccggaggcgtttcatctgcataaattcccg
agaggccccggccccggcaccttcctgcacgggctgctggaatgggcgggcaggcaaggc
tttgacgccgccgcgagcgacgctgaaagcctcgacgatatgctctggcggcgggtacag
ctgcgcggctggcagcagtggcaggagccgctttccggctggctgaccgcactgctcacc
accccgctgccgctggcatctcagcagagtgtggcgctcaccgagcttggcagctaccag
gtcgagctggagttctggctggccgccaaacaggtgaatacccaggccatcgacgcgctg
gttagcaagcacttactgccgggctacgagcgacctgcgctggatgctgacaccctcaac
ggcatgctcaagggctttattgatctggcctttgaacaccaggggcgcttttacgtgctc
gactggaaatccaactacctggggccggacgacagcgcctacgaaccggacgccctgcgc
caggcgctgctcgccaagcgctacgacctgcaggccgcactttatctgctggcgatgcac
cggctgctcaaggcgcgcctgccccactacgacccgcaccagcacctgggcggctcgatg
acggtgtttctgcgcggcagccgcagccccgggcgcggcgtgtataccgaaaccgccccc
gtagcattgatcgaagcactggatggcctgtttacaggcacctcgttttcaacgacaccg
ggggaggccaccgcatga
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