Halomonas sp. A40-4: IT895_06110
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Entry
IT895_06110 CDS
T11047
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hspe Halomonas sp. A40-4
Brite
KEGG Orthology (KO) [BR:
hspe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hspe03016
]
IT895_06110
Enzymes [BR:
hspe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IT895_06110
Transfer RNA biogenesis [BR:
hspe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IT895_06110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF1822
Motif
Other DBs
NCBI-ProteinID:
QPL47342
LinkDB
All DBs
Position
complement(1306151..1308091)
Genome browser
AA seq
646 aa
AA seq
DB search
MLQNNSVLASLKQQIRDTTPRAEGVIKATEKGFGFLETDDGESYFVPPPAMKQVLHGDRV
EGVIHENGDKKSLEPEKLIEAGLDRFVARVQKREDRLAVVPDHPSIRNVLKARIKNSLDE
STIADGDWVVARLVRHPLKENDRGFFSQIDELVAKSDDPAVPWRVTLARHALEQASPNAG
DDWPLHDEGLAREDLTAQPFFTIDGEKTRDMDDALHVTPRAEGGWQMSVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEKLSDELCSLWEDQERPALACTLDINADGSLGNY
RFFAATVKSHAKLAYDHVSDWIDGQGDWAPADNIAEQLTALRDLTEARTAWRNEHALVFK
DRPDYVFDLDDAGNVLGIRTEDRRIANRMIEESMIAANACCADFLAQHIGHGIFNVHRAF
EPEKAEAAQEFLAGQEIEVDQQALTELAHYKDLKRALESRDDAWLDARLRRFQGFTSMSA
QPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEASQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPAAQNQDTFDAEIMAINRGGMRVRLVENGATAFIPAPLMHSDR
SKVVIDDKEGRIQIEGEERYKLGDSLRVVLTEAREETRSLVAKPAA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaaacaattccgtgcttgcctcgctcaagcaacagattcgcgataccacccca
cgtgccgaaggggtgatcaaagctaccgagaaaggcttcgggtttcttgaaaccgacgac
ggtgaatcctatttcgtgccgccccccgccatgaaacaggtgctgcacggcgaccgtgtc
gagggcgtcatccatgaaaacggcgataaaaaatcccttgagcccgagaagctgattgaa
gcggggctcgaccgttttgttgctcgtgtgcaaaagcgcgaagaccgccttgccgtcgtg
ccggatcatccctcgatccgtaacgtgcttaaagcgcgcatcaagaacagcctggatgag
tcgaccattgcggatggtgattgggtcgtcgcccgcctggtgcgtcacccgctgaaagaa
aatgatcgcggttttttcagccagattgacgagctggtagccaaatccgacgaccccgcc
gtgccatggcgtgtcacgcttgcccgtcatgcccttgaacaggcatctcccaatgcgggc
gacgactggccactgcacgatgaaggcctcgcccgtgaagacctgacggcacagcccttc
tttaccatcgacggtgaaaaaacccgcgatatggatgacgcgctgcacgtcacgccgcgc
gccgaaggcggctggcagatgagcgtcgccatcgccgaccctaccgcctatgtggaagaa
ggccacgccgccgatctcgaagcgcgcacccgcgcctttacggtgtatttgcccggccag
aacgtcaccatgctgccagagaagttgtcggatgagctgtgctcgctgtgggaggaccaa
gaacgcccggcactggcctgcacgctggatatcaatgccgacggtagcctgggcaattac
cgcttttttgccgccactgttaaatcccacgccaaactggcttacgaccacgtgtctgac
tggatcgacggccagggtgactgggcaccagcggataacattgccgaacagctgaccgcg
ctgcgcgatttaaccgaagcgcgtaccgcctggcgtaacgagcatgccctggtcttcaag
gatcgtcccgactatgtctttgacctggacgatgcggggaatgttctggggattcgcacc
gaggatcggcggattgccaaccgcatgatcgaagagtcgatgattgccgccaacgcctgt
tgcgccgatttcctcgcccagcacatcggccacggcatcttcaacgtgcaccgcgccttt
gagcccgagaaagccgaagccgcgcaggagttcctggcgggtcaggaaattgaggtggat
cagcaggcgttaaccgagcttgcccactacaaagacctcaagcgcgcgctggaaagccgc
gacgacgcctggctggatgcccgcctgcgccgcttccagggctttaccagcatgtcggcc
caacccggcccgcactttggcttgggccttgccgcctacgccacctggacctcgccgatt
cgtaagtacggcgatatggtcaaccatcgcttgatcaagcgcgtgctgaagggtgaacag
gctccggccgaagccagtcagcagctcaccgagcagttgaccgagcgccgccgtctgaat
cgcatggccgagcgcgacgtcaaagactggctctatgtgcgctacctgacaccggccgcg
caaaaccaggacacctttgacgccgagatcatggcaatcaaccgtggcggcatgcgcgtt
cgcctggtcgaaaacggcgccaccgcctttatccccgcccccttgatgcacagcgaccgc
agcaaggtggtcatcgacgataaagagggccgcatccagatcgaaggtgaagagcgctac
aagctcggcgacagccttcgcgtcgtgctcaccgaagcccgtgaagaaacccgctcgctg
gtggcaaaacccgccgcttaa
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