Halomonas sp. A40-4: IT895_10775
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Entry
IT895_10775 CDS
T11047
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hspe Halomonas sp. A40-4
Pathway
hspe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hspe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT895_10775 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hspe03019
]
IT895_10775 (rne)
03009 Ribosome biogenesis [BR:
hspe03009
]
IT895_10775 (rne)
Enzymes [BR:
hspe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IT895_10775 (rne)
Messenger RNA biogenesis [BR:
hspe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT895_10775 (rne)
Ribosome biogenesis [BR:
hspe03009
]
Prokaryotic type
rRNA processing factors
IT895_10775 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPL44705
UniProt:
A0A7T0RBQ5
LinkDB
All DBs
Position
2301877..2305200
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDERSELKEAMGHLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRAAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDEDDSQTLSSFELSTESDIGKEPAPSFVPPAQRAEAAVKSVAHNAPAPAS
LQHEPSPESPAPESNTSDASMLGRFMRGVAKWLGSDEQRPTPTDQTKKPSEPAAPRKTER
TPSARREETQPNRQRSDSAAKSNTGNAQRSTGNETDEKRNGPSRTRNRRRHPQQDDGNSA
QGNDKKPNRQKDTAQASSAKGSDSDTAGKSAPPKARRESNRDTSRNASDANASDTKNAAK
ANADTPTAKQDDGKPKRTRNNPRQRTRQQAINPKAEAEQLKLQEEAAKAPSESDNASNDA
VTGNGNERQADNHATTETASQATQPTAAAPADTAKQPPAEQEATSSSVDSIADSVDEAPT
TTAESPADNAAKARKSTQQRRQPKRNSRSKGGDTASNEGTDAVPSQDQATVSEEEASTPS
EAAEAPAAQASVTEETPKADPVADQAGANTSSTTAPEQTAAPTAGTDAPEDNTSEAASKP
AASDETAEVSEQPTAQTPQDNDGEQAASAPEASEKAPEQSASQESTSEENAPEVSAEEPV
KASPEAEVEDSPAKPGATEKDTAVKTSPEQAPATEPAAETPSQPAQQAAPDSEAVAKEAA
KPRRRRSRAHNDPREKRKQQANDKNAD
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaatgcgacccagcctgaagagctgcgcgtcgctctggttgat
ggacaacggttgtatgatctggatatcgagtccggcgcaagagagcagaaaaaagccaat
atttatcgtggcaagatcactcgtgttgaaccctcactggaagcagccttcgttgatttc
ggcgccgaacgtcatggttttctaccgttaaaggaaatctcgcgggaatatttcatcaag
gatgtttccggccgtccgagcatcaaggaagtactcaaagagggccaggaagtcattgtc
caggtcgataaggaagagcgcggcaataaaggcgcagcgttaaccaccttcatcagtctg
gccgggcgctttctggtgctgatgcctaacaatccgcgcgccggcggcatctcacgccgt
atcgaaggcgacgagcgtagcgaattgaaagaggccatgggccaccttaccgtacccgat
aaaatgggcctgatcgtgcgcaccgctggcatcggccggagccctgaagaactgcaatgg
gacctggactacctcgttcaggtatgggagtcgatcactaccgaagcgggtaaacgcgcc
gcccccttccttatctaccgcgaatccaacgtaatcattcgcgcgatgcgggactacttg
cgccaggacatcggcgaagtcttgatcgacagccccgagatacacgcagaagcgctcgcc
ttcattcgtcaggtgatgccgtcttaccagcagaagatcaagctttacgccgatgaagtg
ccgctgttctcgcgtttccagatcgaatcgcaaatcgaaacggcctaccagcgcgaagtc
aaactgccgtccggtggatcgatcgttatcgaccataccgaagccctggtatccatcgat
atcaactcggcccgcgccacacgtggcagcgatattgaagaaaccgcgctgcaaaccaat
tcagaagccgccgatgaaatcgctcgtcagctacgcctgcgcgacattggcggcctggtg
gtcatcgactttatcgacatggggcccgcccgcaaccagcgtgaagttgaaaatcgtatg
cgcgatgccctcaagcttgaccgggcacgggtacaaatcggccgcatctctcgctttggc
ctgatggaaatgtcacgtcagcggctgcgtccttcactgggcgaaaccagcggcgtggtc
tgcccgcgctgcaacggtcaaggcaccattcgcgatgtccgctcgctctcgctatccatc
atgcgcctgatcgaagaagaggccatgaaagagcgcagcgcgcaaatacgggctatcttg
ccagtccctgtggcaacctacctgcttaacgaaaagcgtagtgtgctggccgacatcgaa
tcccgccagggcgttcgcgtcgttctgctgcccaacccggaaatggataccccccattac
gatgtgcagcgtctccgcgatgaccacctcgacgaagacgacagccaaacgctctcaagc
tttgagctgtccacggagagcgacatcggcaaagaaccggcgccaagctttgtcccccct
gcccagcgggctgaagcggcggttaaaagcgttgcccacaacgcccctgctcctgcctcg
ttgcagcatgaaccaagcccggaaagcccggcacctgaaagcaacaccagcgatgccagc
atgctgggtcgcttcatgcgcggcgttgccaaatggctgggtagcgatgaacagcgcccc
acgcccactgaccagaccaagaagccgtcagaaccagccgcgccgcgcaaaaccgaacgc
acaccctccgctcgccgtgaagagacgcaacccaaccggcagcgcagcgatagtgcggcc
aagagcaatacgggcaatgcccagcgcagtaccggcaacgagaccgacgaaaagcgtaac
ggcccaagccggacccgcaaccgtcgccgccatccccagcaagatgatggcaacagcgca
cagggcaatgacaaaaagccaaaccgtcagaaggacactgctcaggcaagttctgccaag
ggcagcgacagcgatacagcaggcaaaagcgcaccccccaaagcccgtcgcgagtcgaac
cgtgacacctctcgcaatgccagtgacgcgaatgccagcgacaccaaaaacgctgccaag
gccaacgccgatacgccgacggccaagcaggatgacggcaagcccaagcgcacgcgtaac
aacccgcgccagcgcacgcgtcagcaggccatcaatccgaaggccgaagccgagcagcta
aaacttcaggaagaggctgccaaggcccccagcgagtcggataatgcatcaaatgacgcg
gtgacaggcaacggcaacgagcgccaagcagataaccacgcgaccaccgagactgcatcg
caggcaactcagccaacggccgctgcgccagcggacacggccaagcaaccgcccgctgaa
caggaagcaacctcctcttcagtagatagcatcgctgattcagtcgacgaggcgccaacc
acaacggctgaaagccctgccgataatgcggccaaggcccgcaagtcgactcagcaacgg
cgtcagccaaagcgcaattcgcgttcgaaaggtggcgatacggcatcgaatgaaggcact
gacgcagtgccgtcacaagaccaagcgactgtatcagaggaggaggcttccaccccctcc
gaggccgccgaagcgccagcagcccaggcatcggtaacggaagagacgcccaaggctgac
cccgtcgctgatcaggcgggtgctaacacgtcttcaacaacagcgccggagcagactgcc
gccccaactgccggtacagacgcgcctgaggacaacacctcagaggccgcctccaagcca
gccgccagcgacgaaacggctgaggtaagcgagcagccgacagcgcagacgccgcaggac
aacgatggcgagcaagccgcgtcagcgcccgaggcgtcggagaaggcacctgagcaaagc
gcttctcaagaaagcacttctgaagaaaacgcacctgaagtaagtgctgaagaacctgtt
aaagcgagtcctgaagcggaagtcgaagatagccctgctaagccaggcgctactgaaaaa
gacactgctgtgaaaacctcgcctgagcaggcaccagccacggaaccagcggctgaaacg
ccgtcgcaacctgcgcagcaagcagcgcccgacagcgaagcagtggctaaagaagccgca
aaaccgcgccgtcgtcgcagccgggcacataatgacccgcgcgagaaacgcaagcagcag
gcaaacgacaagaacgccgactaa
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