Heyndrickxia sporothermodurans: JGZ69_05035
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Entry
JGZ69_05035 CDS
T10218
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hspo Heyndrickxia sporothermodurans
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hspo03009
]
JGZ69_05035 (rlmD)
Enzymes [BR:
hspo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JGZ69_05035 (rlmD)
Ribosome biogenesis [BR:
hspo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JGZ69_05035 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PrmA
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Methyltransf_11
RrnaAD
Ubie_methyltran
N6_N4_Mtase
Methyltransf_32
UPF0020
TRM
AIG1
Methyltransf_4
PCMT
Methyltransf_12
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QQX26248
UniProt:
A0AB37HNG4
LinkDB
All DBs
Position
complement(955740..957113)
Genome browser
AA seq
457 aa
AA seq
DB search
MKIQLPVQKNDYIDVTFVDLTHDGNGVAKVDGYPIFVPNTLPGEKAKVKVIKVNKGYGFG
RLIELYEASPYRVEPDCPIYKECGGCQLQHLSYSGQLKAKRKQVQDVLQRIGKLEDVVVH
PVLGMEDPWRYRNKAQVPVGEREGGLIVGFYQNRSHDIINMGACLIQQEKNDVVVQTVKE
ICDRYGVRAYNEQTHKGTLRHIMARYGMKTGEIMIVLITRTAELPNKKSIIEEIIAKLPD
VKSIVQNINPKRTNVIFGDETKVLWGEEVIYDYIGNIKFAISARSFYQVNPEQTKVLYDQ
ALKYANLTGEETVIDAYCGIGTISLFLTEKAKKVYGVEIVPEAIEDAKRNAELNGISNVE
FAVGEAEKVIPKWYEDGIIADVLVVDPPRKGCDETLLQTIIDMKPKKVVYVSCNPATLAR
DLRVLEDGGYRTVEVQPVDMFPQTTHVEVIVKLVLKV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcagctacccgttcaaaaaaatgattatatagatgtcacgtttgttgattta
acccatgacggaaatggcgtggccaaggtcgatggctacccaatctttgtccccaatact
ttgccgggtgaaaaagcaaaggtaaaagtgataaaagtaaataaaggctacggcttcgga
cgtttaatcgaattgtatgaagcaagcccttacagagtcgaaccggactgcccaatttat
aaggagtgtggcggatgccagctccaacacttaagctattcaggtcagttgaaagcaaag
cgcaaacaagtacaggacgttctacaaagaatcggaaagctcgaagatgtcgttgttcac
cctgttctcggaatggaggatccatggcgctaccgcaataaagcgcaagttccagtaggt
gaacgagaaggcggactcatcgttgggttttatcaaaaccgcagccatgacattattaac
atgggagcctgcctcatccagcaggaaaaaaatgatgtagtcgttcaaacggtaaaagaa
atttgtgaccgctacggagtccgcgcgtacaacgaacaaacacataaaggaacactacgc
catattatggcgcgctatggtatgaaaacaggcgaaattatgattgtcctcattacccgt
acggcagaacttccaaataagaaatctatcattgaagaaatcatagctaagctgcctgat
gtgaaatccatcgtccaaaatattaatccgaaacgaacaaacgtcatctttggcgatgaa
acaaaagtactctggggagaagaagtcatttacgattatatcggcaacatcaaattcgcc
atttcagctagatctttttaccaagtaaatcctgaacaaacgaaggtcctatatgaccaa
gcattaaaatatgccaacctaaccggcgaggagaccgtcattgacgcatattgcggcatc
ggtacaatctcactcttccttacggaaaaagcaaaaaaagtatacggggttgaaatcgtc
cctgaagccatcgaagacgccaagcgaaacgctgaactcaatggaatttcaaatgtggag
tttgctgttggcgaagctgagaaggtgataccaaagtggtatgaagatggaataattgca
gatgtactagtcgttgatccaccgcgaaaaggctgtgacgaaaccttgttgcaaacgatt
attgatatgaaaccgaagaaggttgtgtatgtttcgtgtaatccggcgacattagcaagg
gatttgcgagtgttggaggatggcgggtatcggacggttgaagtgcagccggtggatatg
tttccgcagacgacgcatgtggaggtgatagtgaaacttgttttgaaagtgtaa
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