Heyndrickxia sporothermodurans: JGZ69_06275
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Entry
JGZ69_06275 CDS
T10218
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hspo Heyndrickxia sporothermodurans
Pathway
hspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGZ69_06275 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hspo03021
]
JGZ69_06275 (rho)
03019 Messenger RNA biogenesis [BR:
hspo03019
]
JGZ69_06275 (rho)
Transcription machinery [BR:
hspo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JGZ69_06275 (rho)
Messenger RNA biogenesis [BR:
hspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JGZ69_06275 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
ATPase_2
AAA_22
AAA
NACHT
AAA_25
Mor
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QQX27389
UniProt:
A0A150KM15
LinkDB
All DBs
Position
complement(1202515..1203798)
Genome browser
AA seq
427 aa
AA seq
DB search
MESLSISSLDNMTLKELYALAREYKVSYYSKLTKKELIFAILKARAEQEGYFFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGENPESAKERVHFPALTPLYPDRQIKLETAPNKLSTRIMDLIAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNNPEAELIVLLIDERPEEVTDIERSVNAEVVSSTFDEVPENHIK
VAELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMELHLDRSLSEKRIFPAIDIR
RSGTRKEELLIPKEHLDKLWAIRKSMSDTPDFVERFLRKLKKTKTNEEFFEVLTAEMKGN
TTNRRTV
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggagagcttatcaatttcaagtcttgataatatgacattaaaggaactatatgcatta
gctcgtgagtataaagtttcttattatagtaaattaacaaaaaaagaattaatttttgcg
atattaaaagcccgcgcagaacaagaaggctatttctttatggaaggtgttcttgaaatc
atccagtctgaaggttttggcttcttaagaccaattaattattccccaagttcagaggat
atttacatttccgcctctcaaattcgtcgttttgatttacgaaatggcgataaagtctct
gggaaagtaagacctccaaaagaaaatgaacgttactatggattgcttcatgtagaagcg
gttaatggtgaaaatcctgaatcggcaaaagagagagtacatttcccagcgttaactccg
ttatatccggatagacagattaaattagaaacggctcctaataagctatctactcgtatt
atggatttaattgcacctgttgggttcggacagcgtggtttgatcgttgcacctccgaaa
gcaggaaaaacgatgcttttaaaggaaattgctaattctataacaacaaataacccggaa
gctgagcttatcgttttattaatcgatgaacgacctgaagaggttactgatattgaacga
tcagtaaatgcagaagtagtaagctcaacttttgatgaagttcctgaaaatcatataaaa
gtagctgaacttgtattagaaagagcgatgcgtcttgtagaacataaacgtgatgttgtt
atacttatggatagtattacccgtttggctcgtgcatacaatttagtcatcccgccaagt
ggacgaactctatcaggtggtatcgatccagcagctttccacagaccaaaacgtttcttt
ggagcagctcgtaatattgaagagggtggaagtttaacgattttagcaactgcactcgtt
gaaacaggctcacgtatggatgatgtaatttatgaggaatttaaaggaacgggaaatatg
gaattacatcttgatcgttcattatctgaaaaacgtattttccctgcgattgatattcgt
cgatctggaacgcgtaaagaagaacttttaattccgaaagaacatttagataaactttgg
gcaattcgtaaatctatgtcagatactccagattttgtggaaagatttttacggaaatta
aagaaaacaaaaacgaatgaggaattcttcgaagtattaacagctgaaatgaaaggcaac
acaacaaacagacgtacagtgtaa
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