Heyndrickxia sporothermodurans: JGZ69_06625
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Entry
JGZ69_06625 CDS
T10218
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hspo Heyndrickxia sporothermodurans
Pathway
hspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGZ69_06625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hspo03019
]
JGZ69_06625
03400 DNA repair and recombination proteins [BR:
hspo03400
]
JGZ69_06625
Enzymes [BR:
hspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JGZ69_06625
Messenger RNA biogenesis [BR:
hspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JGZ69_06625
DNA repair and recombination proteins [BR:
hspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JGZ69_06625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Zn_ribbon_NOB1
Motif
Other DBs
NCBI-ProteinID:
QQX26513
UniProt:
A0AB37HD03
LinkDB
All DBs
Position
complement(1274944..1276122)
Genome browser
AA seq
392 aa
AA seq
DB search
MESNLNNYLVFIELFTIPVHIQKFLIDQSEMDDERKENEYGKLRKMISYCHTESCFQQYI
LEYFGEENATVCRKCGNCTDDRIQVDVTKEAQMVLSCIKRMNERFGKTFITKVLTGSSDK
KIKSFGFNKLSTYGIMKERTQKEVNELIDFLTAEGYLRPTDGQYPVLMLTNQAVEVLRGE
STVLRKERVKVKQLIEDNQLFERLRKLRKEIADMEKVPPYIIFSDQSLKEMSAKLPTSKN
ELLQIKGVGERKLEQYGDAFITVITSYCEENGIAVEKHDDFIMARSETTKDDKEKSHHVT
FSFLQQGLTIDEIAAKRNMTIRTIEGHLIKCAEEGISIDWDQFIPSQYEELIKEAVREAD
TQRLTPIKQLLPEEISFFMIRAFLQREKEQKV
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtaacctaaacaactatttagttttcatagaactttttacaatacctgttcac
atccaaaagtttttaattgatcaatctgaaatggatgatgagcggaaagaaaacgaatat
ggtaagcttcgcaaaatgataagttattgccatacggaatcgtgttttcaacaatatatt
ttagagtatttcggggaagaaaacgcgacggtatgccgaaaatgcgggaattgtacagat
gatcgcattcaagtggatgtcactaaagaagcgcaaatggtgttgtcatgtataaaaaga
atgaatgaaagatttggaaaaacatttattacgaaagtgctgacaggttcatcagataaa
aagattaaaagcttcggatttaataaattatcaacgtatggaattatgaaagagcgaaca
caaaaagaagtgaatgaactaatcgattttttaacagccgaggggtacttgcgcccaaca
gatggacaatatcctgtcttaatgttgactaatcaagcagttgaggttttgcgtggagaa
agtacggtactaagaaaagaaagagtgaaagttaaacagcttattgaggataaccagcta
tttgaacggctaaggaagcttcgaaaggaaattgcagatatggaaaaagtgcctccgtat
attattttttccgatcaatccttgaaggaaatgagtgcaaagctgccaacttcgaaaaat
gaattattacaaattaaaggagtaggggagcggaagttagaacaatacggagatgctttt
atcacagttatcacatcttactgtgaagaaaatgggattgctgtagaaaagcatgatgat
tttattatggctagaagcgaaacaacaaaggatgacaaagagaaaagccatcatgtaact
ttctccttccttcaacaaggcttaaccatcgatgaaattgccgctaaacgaaatatgacg
atacgaacaattgaaggacatttaatcaaatgtgcggaagaaggcatttctattgattgg
gatcaatttatcccttcacagtatgaagagttaataaaagaagcagtgagagaagccgat
actcaaaggttgacgcctattaaacagttactccctgaggaaatcagcttttttatgata
cgagcatttctacaaagggaaaaagagcagaaagtataa
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