Heyndrickxia sporothermodurans: JGZ69_07925
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Entry
JGZ69_07925 CDS
T10218
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hspo Heyndrickxia sporothermodurans
Pathway
hspo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JGZ69_07925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hspo03400
]
JGZ69_07925 (mfd)
Enzymes [BR:
hspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JGZ69_07925 (mfd)
DNA repair and recombination proteins [BR:
hspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JGZ69_07925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QQX26722
UniProt:
A0AB37HJY9
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All DBs
Position
1537530..1541060
Genome browser
AA seq
1176 aa
AA seq
DB search
MKDLQKIILQQDEMDSVISGIEAGLKEQLIAGLSGSSRALFIASIYQKVDQQLIIVTHNL
LQAQKLYEDLQSFIDENMLYLYPANELIAAEIGIASPELKGQRIEALNFMTSKAKGIVIV
PMAGLRRILPSPTIWKKYQLSFKIGQEIDLENILNNLIIMGYQRNEMVSAPGEFSLRGGI
LDLYPLTEANPVRIELFDTEIDSIRLFSLENQKSLTKVEEIIIGPATESPIDPEKLLVVA
DKLEKNLANTLKKVKKDSAKELLVQNIGYDIEMLRNKQKPEQFFKYTSLAYETPTSLLDY
ASGDGILVFDEYSRIQEINDRLLNEEAEWFTSMLEDGQIVHDIEVSHSLSKLLVQTTLSR
IYLSLFLRHIPNTSPQNILNITCRPMQNFHGQMHVLKSEIDRWKKGHYTVIFLGSDKNRV
NKLHSVLEDYEIEAAVIEDKGKVLQNHIQVIEGTLNTGFELSMMKLAVITEEELFNKSKK
KTKNRQRLSNAEKIKSYSELKVGDYVVHVNHGIGKYLGIETLVINGIHKDYLHLRYQGND
KLYVPVEQIELVQKYVGSEGKEPKIYKLGGSDWKRVKKKVQSSVQDIADDLIKLYAEREA
AKGYAFSPDGDLQREFETSFPYQPTEDQLRSVQEIKHDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIMDGKQVAFLVPTTILAQQHFETIKERFQDYPINIGLLSRFRTKKQQTETLK
GLKNGTVDIVVGTHRLLSKDVQYHDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGHFVREAIERELSRNGQVYFLYN
RVEDIARKAEEISALVPDARVTFAHGQMTEGELESVILSFLEGEYDVLVTTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVSEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEERKGQGQTTKPSF
EVELEIDAYIPDTYIADGHQKIEMYKRFRGITTLEEVEELKEEMIDRFGDYPLQVALLFM
VAEIKVYGSSAMLESIKQVKQQITILMSEQGTKNVDGPKLVEALNKYGRSVGFGMDGNKL
KITLAIKGQEQEKWVSLAYQIIKEIKDAVKEEEHVS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttacaaaagattattttacagcaagatgaaatggactcagtaatctcaggt
attgaggcaggtttgaaggaacaacttattgccggtctatcaggctcatcaagggcattg
tttattgcgtctatttatcaaaaagtagatcagcaattaatcattgttactcataattta
cttcaagctcaaaaattatatgaagatttgcaaagctttattgatgaaaatatgctttat
ttatatcctgcaaatgaattgattgcagctgaaattggcattgccagtccagagttaaaa
ggacaaaggattgaagccctaaactttatgacttctaaggcaaaagggattgtcattgtt
cctatggcaggattgcggaggattctcccatccccaacaatttggaaaaaatatcaactg
tcattcaaaattgggcaggaaattgatttagaaaatatattaaacaatttaattattatg
ggttatcaaagaaatgagatggtgagcgctccgggagaattcagtcttcggggaggaata
cttgatctttacccattaacagaagcaaacccagttcgtatagaactttttgatactgaa
attgattctattcgtttattttcacttgaaaatcaaaaatcccttacaaaagtagaggag
attattattgggcctgctacggaatcgccaatcgatcctgaaaagttactagtagtggca
gataagttagaaaagaatttagcgaatactttaaaaaaggttaaaaaggattcagcaaaa
gaactgttagttcaaaatattggctatgatatcgaaatgcttcgcaataaacaaaaaccg
gaacaattttttaaatatacatcattagcctatgaaactcctactagtttactagattat
gcttcaggtgatggtatattagtttttgatgaatatagtcggatccaagaaataaatgat
cggttattgaatgaagaagcagagtggtttacttcaatgctggaagatgggcaaattgtg
catgatattgaggtgtcacatagtttatcaaaactattagttcaaaccactctttctcgt
atttacttgtcattatttttacgccatattcctaacacaagcccacaaaatattcttaat
attacttgtagacctatgcaaaatttccacggacaaatgcacgtattaaagtctgaaatt
gaccgttggaaaaaaggccattacacagttatttttcttggaagtgataaaaaccgtgta
aataaattacatagtgtcttagaggattatgaaatcgaagctgcagttatcgaagataaa
ggtaaggttttgcaaaatcatatacaagtgattgaaggaactttaaatactggttttgaa
ctatccatgatgaaattggcagtcattacagaagaagaactttttaacaaaagtaagaaa
aaaacaaaaaacagacaaagattgtctaacgcggaaaaaattaaaagctattcagagctc
aaagtaggcgactatgttgttcatgtgaatcatgggataggaaaatatttaggaatagaa
acgttagtcattaacggtattcataaagattatctacatttaagatatcaagggaatgat
aaactctatgtacctgttgaacaaatagaattggttcaaaaatatgtaggttctgaagga
aaagaaccaaagatttataaattaggtggtagtgactggaagcgtgtgaagaaaaaagtt
caatcatctgttcaggatatcgcggatgatttaattaagctctacgcagaaagggaagcc
gcaaaagggtacgctttttcacctgatggggatttacaaagagaatttgaaacatctttc
ccatatcaaccgacagaggaccaacttcgttctgtgcaagaaattaagcatgacatggag
agggaacggccaatggatcgtttattatgcggtgatgttggttatggaaaaacggaagta
gcaattcgcgccgcatttaaagcgattatggatggtaagcaagtagcttttttagtgcca
actacaatattagcacagcaacattttgaaacaattaaagagcgttttcaagactatcca
atcaacattggcctattgagtcgctttcgaacgaaaaaacagcagacagaaacattaaaa
gggttaaaaaatggtacggtagatattgttgtcgggacacatcgacttctttcaaaggat
gttcagtaccatgatttaggtttattaattattgacgaagaacaacgttttggcgtgaca
cataaggaaaaaatcaagcaattgaaaacaaatgttgatgtattaacattaacagcaaca
ccaataccaagaacgcttcatatgtctatgttgggggttcgggatttatctgtgattgaa
acaccaccggaaaaccgttttccggttcaaacatatgtgatggagtataatggtcacttc
gttcgcgaagctatcgaacgtgaattatccagaaacggacaagtatattttctatataat
agagtagaagatattgcaagaaaagcggaagaaatatcggcattagtccccgatgcacgg
gtaacgtttgctcatggtcaaatgacagaaggagaattggagtcagttatattaagcttc
ttagagggcgaatacgatgtcttagtaacgacaacaattattgaaacaggtgtggatatc
cctaatgtaaacacgttaattgtgtatgatgcggatcggatgggcttatcccaattgtat
caattacgtggccgtgttggtcgttcaaatcgggttgcatatgcttattttacgtatcga
aaagataaagttctaaccgaagtatctgagaagagattgcaagcgattaaagaatttact
gaactaggttccggttttaaaattgccatgcgagatttatcgatacgtggtgccggaaat
attcttggtgcccagcaacatggatttattgattccgtaggatttgatctttattctcaa
atgttaaaagaggcaattgaggaacggaaagggcaaggacaaacgaccaaaccttcattt
gaagtggaattagaaatagatgcctatataccggatacgtatattgccgatggtcatcaa
aaaattgagatgtataaaaggtttagaggaatcactactctagaagaagttgaagagtta
aaggaagagatgattgatagatttggtgattatccattacaggttgcacttttgtttatg
gtagctgaaataaaggtttatggatcaagtgcaatgctagagtcaatcaaacaagtgaaa
caacaaatcactattcttatgtcagaacagggaacaaaaaatgtggatggtccgaaacta
gttgaggctttaaataaatatggacgatctgtaggttttggtatggatggtaataaacta
aaaataactctagccataaagggtcaagagcaagagaaatgggtttctctcgcataccaa
attataaaagagataaaagatgcagtaaaagaagaggagcatgtcagctaa
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