Heyndrickxia sporothermodurans: JGZ69_08245
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Entry
JGZ69_08245 CDS
T10218
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hspo Heyndrickxia sporothermodurans
Pathway
hspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JGZ69_08245 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hspo03021
]
JGZ69_08245 (rpoC)
03400 DNA repair and recombination proteins [BR:
hspo03400
]
JGZ69_08245 (rpoC)
Enzymes [BR:
hspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JGZ69_08245 (rpoC)
Transcription machinery [BR:
hspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JGZ69_08245 (rpoC)
DNA repair and recombination proteins [BR:
hspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JGZ69_08245 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
SpoVIF
Motif
Other DBs
NCBI-ProteinID:
QQX26763
UniProt:
A0A150LF71
LinkDB
All DBs
Position
1599697..1603293
Genome browser
AA seq
1198 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTETGDTPLEKKQLLSEKEYRAYREKYGNKFQASMGAEAVKKLLQ
DIDVNKEVDMLKEELKTAQGQRRTRAIKRLEVLEAFRHSGNEPDWMILDVLPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAVGEGKIFKDINEALLAYQNGYVHLHTRIAVL
ASSVNNQTFTEEQKSKLLITTVGKLIFNEILPESFPYMNEPTKMNLEEKTPEKYFVDTDV
DVKEHISKQPIIKPFIKKFLGNIIAEVFKRFQITETSKMLDRMKDLGFKYSTKAGITVGV
ADIVVLGEKEHILADAQSKVDNVMKQFRRGLITEDERYDRVISIWSAAKDTIQGKLMESL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLVGSLKEGTEIIETLE
ERLIGRYARKAIKHPETGEVLVAENGLITEDLSKEIVNAGIEEVWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQSIISEIDGVVVSITEGRDRQQEISVQGDVETRTYNAPYTSRLKVAVNSKVER
GQELTEGSIDPKELLKVRDVNSVQEYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
INAGDTDVLPGSLLDIHQFTDANEKVILEGKLPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRAEPVVPLEEDEHAIVE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataattttgagtatatgaaaattggtcttgcttcaccagataaaatc
cgctcttggtcttttggcgaagtaaaaaaaccagaaacaatcaattatagaactttgaag
cctgaaaaagacggtctattttgtgaacgtatatttggtccgcaaaaggactgggaatgt
cattgcggaaagtataagcgtgtacgatataaaggtgtagtatgtgaccgctgtggtgtt
gaagttactcgttcgaaagtccgtcgtgaacgtatgggtcatattgaacttgctgcacca
gtttcgcatatttggtatttcaaaggaatcccaagtcgtatgggtcttgtattagatatg
tccccacgcgcattagaagaagtcatctatttcgcttcctatgtagtaactgaaacagga
gatacaccattagaaaagaaacaacttctttctgaaaaagaatatcgtgcatatcgcgaa
aaatacggtaataagttccaagcatcaatgggtgcggaggctgtgaaaaaactactccaa
gatattgatgtaaacaaagaagtagatatgttaaaagaggagcttaaaacagctcaagga
caacgtcgaacaagagcgattaaacgactagaagttttagaagcattccgtcactccgga
aacgaacctgactggatgattttagacgttctacctgttattccacctgaattaagaccg
atggttcaattagaaggtggacgtttcgctacttccgatttaaacgatttatatcgtcga
gtgattaatcgtaataatcgcttaaaacgacttttagatttaggtgctcctagcattatt
gtgcaaaacgaaaaacgtatgcttcaagaagctgtagatgccttaattgacaatggacgt
cgtggtcgtcctgtaacaggaccgggaaatcgcccgctaaaatctctttcacatatgtta
aaaggaaagcaaggacgtttccgtcaaaaccttcttggtaaacgtgtagattactctggt
cgttctgtaatcgtcgttggaccaagtttgaaaatgtatcaatgtggtcttccaaaagaa
atggcccttgaactattcaagccttttgtaatgaaagagcttgttgaaaaaggtttggct
cataatattaaaagtgcaaaacgaaaaattgaacgtgttcaacctgaagtttgggacgtt
ttagaggaagtaatcaaagaacacccggtattattgaaccgtgcaccaactctgcataga
ttaggtattcaagcgtttgaaccaacacttgttgagggtcgcgcaattcgcctgcatcca
cttgtttgtactgcatataatgcagactttgatggagaccaaatggcggttcacgtacct
ctttctgctgaagcacaagcagaagcacgactattaatgctggctgctcaaaacattctt
aacccgaaagatggtaagccggttgtaacaccttctcaagatatggtattaggtaactac
tatctaacattagaacgtgaaggtgcggttggagaaggtaaaatcttcaaagatataaat
gaggctttacttgcttatcaaaatgggtacgttcatttgcatacgcgtattgccgtactt
gcaagttcggtgaataatcaaacatttactgaagaacaaaaatcgaaacttcttatcaca
actgtaggtaaattaattttcaatgaaatattacctgagtcattcccttatatgaatgaa
ccaacaaaaatgaatttggaagaaaaaactccggagaaatactttgttgatacagatgtc
gatgtgaaagaacatattagtaaacaaccaattatcaagccatttattaaaaagtttctt
ggaaatatcatcgcggaagtctttaaacgtttccaaataactgaaacctcaaaaatgctt
gaccgcatgaaggatttaggatttaaatattctaccaaagccggaatcacggttggtgtt
gctgatatcgttgtattaggtgaaaaagagcatattttagcagatgctcaaagcaaagtt
gataatgttatgaaacaattcagacgtggtctaattactgaagatgaacgttatgatcga
gttatttctatttggagtgctgcgaaggatactattcaaggaaaactaatggaatcactc
gataaacgaaatccaatcttcatgatgagtgactccggtgcccgtggtaacgcatctaac
tttacacagttagcgggtatgcgtggattgatggccaacccggcaggtcgtatcattgag
ttgccaattaaatcaagtttccgtgaaggattaactgtattggaatactttatctccact
cacggtgcgcgtaaaggtcttgctgatacagcattaaaaacagctgactctggttactta
acacgtcgtcttgttgatgttgcacaggatgtaattgttcgtgaagatgattgtggtacc
gataggggattattagttggttcactaaaagaaggtacagaaataatcgaaacattagaa
gaacgattaattggtcgctatgcaagaaaagcgattaaacatcctgaaactggcgaagta
cttgttgctgaaaatggtttaattacagaagacttatcgaaagaaattgttaatgcggga
attgaagaagtatggattcgttcagcatttacatgtaatacacgtcacggtgtttgtaaa
aaatgttatggacgtaacttggcgactggtcaggaagttgaagtaggtgaagcggttggt
attatcgccgcgcaatcgatcggggaaccaggtacacagttaacgatgcgtacattccat
actggtggggttgccggagacgatattacacaaggtctgcctcgtattcaagagctattt
gaagcgcgtaatccaaaaggacagtcgattatttcagaaattgatggtgttgtcgtttcg
attactgaaggaagagaccgacaacaagaaatttcagttcaaggtgatgtcgaaacgcgg
acatacaatgctccatatacttcacgcctaaaagtggctgtaaatagtaaagtagaacgc
ggacaagaattaacagaaggttcaattgatccgaaagaattacttaaagttcgtgatgtt
aattctgttcaagagtatctccttaaagaggtacagaaagtttatcgtatgcaaggggta
gaaattggcgataagcatatcgaagtaatggttcgccaaatgcttcgtaaagtaagagta
atcaatgctggagatacagatgtattaccaggatcattacttgatatccatcagtttacc
gatgcaaacgaaaaggttattttagaaggaaaattaccagctacaggtcgtcctgtatta
cttggtattacgaaagcatcgcttgaaacggattccttcctttcagcggcgtcattccaa
gagacaacacgtgtactaacagatgcagcgattaaaggaaaacgtgatgaactacttgga
ttaaaggaaaatgttattatcggaaaacttgttcctgcaggtactggtatgcaacgttac
cgtagagcagaacccgttgttcctttagaagaagatgaacatgctatcgtagaataa
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