Heyndrickxia sporothermodurans: JGZ69_15990
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Entry
JGZ69_15990 CDS
T10218
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hspo Heyndrickxia sporothermodurans
Pathway
hspo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JGZ69_15990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hspo03021
]
JGZ69_15990 (rpoD)
Transcription machinery [BR:
hspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JGZ69_15990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF2316
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QQX24295
UniProt:
A0A150LGU7
LinkDB
All DBs
Position
3119594..3120727
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AA seq
377 aa
AA seq
DB search
MAEKSARSKEIESELTLDQAKEQLVERGKKRGILTYEIISSKLGHFELDSEQMDEFYEYL
GDQGIEITEENDDEDEDAPNIHELEKDDEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDL
LSAEEEISLAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA
VEKFDYDKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG
REPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA
AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL
RKLRHPSRSKRLKDFLE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaatcagctcgttccaaagaaattgaatccgaattaactcttgatcaagct
aaagagcaattagttgagcgtggtaaaaaaagaggtatattaacatatgaaataatctca
agtaaattaggtcatttcgaattagattctgagcaaatggatgaattttatgaatattta
ggtgaccaagggattgagattacagaagaaaatgatgatgaagatgaggatgctccaaac
attcatgaacttgagaaagatgatgaagagtttgatctaaatgatttaagtgttcctcca
ggtgtaaaaataaatgacccggtccgaatgtacttaaaggaaattggccgagtagactta
ctttctgctgaagaagagatctctcttgctaaacgtattgaacaaggcgatgaagaagcg
aaaagacgacttgcagaagcaaatttacgtttagtagttagtattgctaaaagatacgtt
gggcgcggtatgcttttcttggacctaattcaagaaggtaatatgggactaattaaagca
gttgaaaaatttgattatgataaagggtttaaatttagtacgtatgcaacttggtggata
cgtcaagcgattacacgtgcgattgcggaccaagcccgtacgattcgtattccggttcac
atggttgagacaattaataaattaattcgcgttcaacgacaattattacaagacttaggt
cgtgaaccatctcctgaagaaatagcagaagaaatggatttaactccggaaaaggtaaga
gaaatcttaaagattgctcaagagccagtttcattggagactccaataggtgaagaagac
gattcccatctaggtgattttatcgaagatcaagacgcaacttcaccatctgaacatgct
gcatatgaattattaaaagaacaattagaagatgttttagacacgttaactgatcgtgaa
gaaaatgttctccgacttcgttttggacttgatgacggccgtacaagaacccttgaagaa
gtaggcaaggtattcggtgttactcgagaaagaatacgtcaaattgaagccaaagcccta
cgcaaacttcgtcatccaagcagaagtaaacgattaaaggatttcttagaataa
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