Hyla sarda (Sardinian treefrog): 130272913
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Entry
130272913 CDS
T11475
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03013
Nucleocytoplasmic transport
hsq03015
mRNA surveillance pathway
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130272913 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
130272913 (NCBP1)
03015 mRNA surveillance pathway
130272913 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130272913 (NCBP1)
03041 Spliceosome [BR:
hsq03041
]
130272913 (NCBP1)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
130272913 (NCBP1)
Spliceosome [BR:
hsq03041
]
Common components
Common spliceosomal components
Cap binding complex
130272913 (NCBP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
NOCA1_mid
Nuf2_DHR10-like
DUF7365
Cob_adeno_trans
WIT1_2_N
LUC7
DUF2524
Motif
Other DBs
NCBI-GeneID:
130272913
NCBI-ProteinID:
XP_056374895
LinkDB
All DBs
Position
1:complement(320314737..320395493)
Genome browser
AA seq
787 aa
AA seq
DB search
MSRRRHSDDDGGQPHKRRKTYEPLDIEDRLESLICRVGEKSTSSLESNLEGLAGVLEADL
PNYKSKILRILCAVARYLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRHLKETIKSNAY
MEAAYLVRFLSDLVNCHVIAAPSMVAMFENFIGVTQEEEIPQVRSDWYVYVVLSSLPWVG
KELYEKKDVEMDRVLSQVESYLKQRQKTHLPILQVWSAEKPHPQEEYLDCLWAQIQKLKK
DRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTKDSVYPMPRVIFRMFDYTDAPEGP
VMPGSHSVERFVIEENLHCIIKSHWRERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELFQ
IPVPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYTRLDTMNVTCIDRFINWFSHHL
SNFQFRWNWEDWADCLSQDLDRPKPQFVREVLEKSMRLSYYQRILDIVPSSFSALYPAEP
KCVNKYGDESSSALPGYALAVTLTNAIKNKAVNEDVFNILKDVQNPNHDDDDDEGVSFNP
LKIEVFVQSLLNLASKSFSHSFSAIAKFHEVFKALSDSEEGKLHILRVVYDVWKSHPQMI
AVLVDKMIRTQIVDCAAVANWIFSPEISRDFTRLFVWEILHSTIRKMNKHVQKIQKELED
AKQRLAKQHKRRDSYDDSGREDGPLEEQIDRLQEKVESAQSEQKNLFLVIFQRFIMILTE
HLVRCETGGIDVITPWYKNCIERLQQIFLQHHQIIQQYMLTLENLLFTGELDHHILTVFQ
QFCALQA
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggagaaggcacagcgatgatgatggagggcaacctcacaaaaggcggaaaact
tatgaacctcttgatatagaagatcgtcttgagtcactgatatgtagagtcggggagaag
agtacctcctcactggaaagcaacctggaaggactggctggtgttttggaagctgacttg
ccaaactacaaaagcaaaatcttaagaatactttgtgcagtagctcgctatctgccggag
aagatgactgtttacactacactagtgggactgctgaatgcaagaaactacaattttggt
ggagaatttgtggaagctatgattcgtcatctgaaagaaaccataaagtctaatgcatat
atggaagccgcatatctggtccgctttttgtctgatcttgtgaattgccatgtcatcgca
gccccctcaatggtagcaatgtttgaaaatttcattggagtcacacaggaagaagaaatc
cctcaggtccgatctgattggtatgtgtatgtggttctttcttccttgccttgggttggg
aaagaattatatgagaagaaggatgtagagatggaccgtgttttatcacaagttgaaagc
tacctcaagcaacgtcaaaaaacccatttgcctatattacaagtatggtcagcggaaaag
cctcacccacaagaagagtacctggattgtctttgggcccagattcaaaagttgaagaag
gatcgctggcaggaaagacacatattgcgcccataccttgcttttgatagcatattgtgt
gaagcattgcaacataatttaccaccctttacaccaccacctcacactaaagattcagtc
tatcctatgccgagggtcatattcaggatgtttgactacacagatgctcctgagggtcca
gtaatgcctggatctcattctgtagagcgatttgtcatagaagaaaatctgcactgcatc
ataaaatcacactggagagagaggaaaacatgtgctgcacagcttctcagctaccctggg
aagaataagattcccttgaactatcatattgttgaggtcatctttggagaattgttccag
atcccagttccaccacacatagatgtcatgtacacaacactgttaattgagctttgcaaa
ctacaaccaggatcattgccccaagtgcttgcccaagccaccgaaatgctatatactcgc
ttggatacaatgaacgtaacatgtattgacagattcataaattggttttcacaccacctg
agcaactttcagtttagatggaattgggaagattgggcagattgtctgtcacaggacttg
gatagaccgaaaccccagttcgttcgggaagtcttggagaaaagcatgaggctttcttac
taccaacgaatattggatattgtaccttcgtccttttctgcattgtacccagctgagcca
aaatgtgtaaacaaatatggtgatgagagtagcagtgctctgcctggatatgctcttgcg
gttaccttgaccaatgccataaaaaataaggcagttaatgaagatgtttttaatatttta
aaagatgtgcaaaaccccaaccatgatgatgatgacgacgaaggagtaagctttaaccca
ttgaaaatagaggtgtttgttcagtccctacttaatttggcctcaaaatcatttagccat
tcatttagtgcgattgcaaagtttcatgaagtatttaaggctctgtctgacagtgaggaa
gggaagctccatattctgagagtagtttatgatgtctggaaaagtcatcctcagatgatt
gcagttcttgtggataaaatgatacgtacacaaattgttgattgtgctgctgtagctaac
tggatcttctccccagagatatcacgtgattttactaggttatttgtttgggaaattttg
cactccacaattagaaaaatgaataaacatgtccaaaaaatccagaaagagttggaggat
gctaaacaacggctagccaaacagcacaaacggcgagatagttatgatgacagcggaagg
gaggatggacccctggaggagcaaattgatcgtttacaagaaaaagtggagtctgctcaa
agtgaacaaaaaaatcttttccttgttattttccagcgctttattatgatcctcacagag
cacttagtccgctgtgaaacaggaggcattgatgtgataactccatggtataagaactgc
attgagagacttcaacaaatttttttacagcatcatcagataatccagcagtacatgttg
actttggagaatctgttgttcacaggagaactggaccatcacattctgactgtcttccag
cagttctgtgcattgcaggcttaa
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