Hyla sarda (Sardinian treefrog): 130291627
Help
Entry
130291627 CDS
T11475
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130291627 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsq03041
]
130291627 (DHX16)
Enzymes [BR:
hsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130291627 (DHX16)
Spliceosome [BR:
hsq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130291627 (DHX16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
GIPC1_GH2
nSTAND3
Flavi_DEAD
Cas3-like_C_2
PWI
SRP54
Motif
Other DBs
NCBI-GeneID:
130291627
NCBI-ProteinID:
XP_056396581
LinkDB
All DBs
Position
9:complement(163955569..163994366)
Genome browser
AA seq
1036 aa
AA seq
DB search
MDGIEAWVKERLHDVLGMSDRHVAQFLVGIARRSSNTADFLSRLNDTGAIDMTDKVRTFA
EELWGKLPHKAPVERPARAAEREALALQQKNKSYALLEDSDEEEEEKVASKDEKKRKKKH
LRKRRKEELSDSESDRAQNEKAPSPQVISDDEEEREEQARLKDLEERDAFAERVKLRDKE
KTRNIVERSDKKAYEEAQKRLKLAEEDRKQMIPELRKKSRRDYLGKREKEKLEDLEAEIA
DEEYFFADSRLTAAERKDLEYKRKVRDLAKDYKKAGEKERMEKHDRYFMPEESRSKKIPD
RYEEPISEERFAPREEQRRWEEEHIGAAALKFGAKDAHARGQKEYDYVMEEDEIIQFVSA
TQIKGTVEKEDENTKQLSELEKQKLSIQEVRRSLPVFPYRSDLLQAIANHQVLIIEGETG
SGKTTQIPQYLHEEGYTSKGMKVGCTQPRRVAAMSVASRVAQEMAVKLGNEVGYSIRFED
CTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDVLFGLIKDIARFRPD
LKVLVSSATLNTERFSSFFDDAPIFRIPGRRYPVDIYYTKAPEADYLEACVVSVLQIHVT
QPTGDILVFLTGQEEIEACCEMLQERCRRLGSKIAEMLILPIYANLPSDMQAKIFDPTPP
GARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSKASANQRAGR
AGRVAAGKCFRLYTAWAYKNEMEDTTVPEIQRSNLGNVVLLLKSLGINDLIHFDFMDPPP
HETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEKYGCSEQILTIAA
MLSVNNAIFYRPKDKLVHADTARANFTVPGGDHMVLLNVYTQWVETGHSLQWCYENFIQA
RSLRRARDVREQLEGLMARIEIELTSCEGDIVPIRKAVTAGYFYHTARLTRSGYKTVKQQ
QSVFIHPNSSLHEEQPRWVIYHELVFTTKEFMRQIIEIDSGWLLEVAPHYYKSRELEDAS
SKKMPKQAGKSKEELG
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggacggaatagaagcgtgggtgaaggagcggctccacgatgtcctgggaatgagcgat
cgccacgtggcgcaattccttgtcggcatcgcccggcgcagttcaaacactgcagacttt
ctgagtcgtctaaatgacacaggagccattgacatgacggacaaagtgcgcaccttcgca
gaggagctgtgggggaagctgccccataaagccccggttgagcgtccggccagagctgcc
gagcgagaggctttagcactgcagcagaaaaacaaatcctatgctctgctggaagacagc
gacgaggaagaggaggagaaggtggcaagcaaagacgagaagaagaggaaaaagaaacat
ctgaggaagaggaggaaagaggaattgtctgacagcgaaagtgaccgagcacaaaatgag
aaggcgccatcgccgcaggtcatctctgacgatgaggaggagcgggaagagcaggccagg
ttgaaggaccttgaagagagagatgcgtttgcggagagggtaaaacttcgagataaagaa
aagaccaggaacattgtagagaggtctgacaaaaaggcttatgaagaagcgcaaaagaga
ctcaaactggcagaggaggatcgtaaacaaatgattccagagttgcggaaaaagtcccgc
agagactatcttgggaagagagaaaaggaaaagcttgaggacctggaagccgagatagcg
gatgaagagtatttcttcgcagacagcaggttgacggcggccgagaggaaagaccttgaa
tacaagaggaaagtcagggatttggccaaagactacaagaaagccggggagaaggaacgc
atggaaaaacatgaccgatatttcatgcctgaggagagtcggagtaaaaaaattccagac
cggtacgaggaaccaataagcgaagaacgttttgcccctcgggaagaacagagacgatgg
gaggaggaacacatcggtgctgcggctttgaaatttggagccaaagacgcccacgctcgc
ggtcagaaggaatacgactacgtgatggaggaagacgagatcatacagtttgtcagcgcc
acacagattaaagggaccgtggagaaggaagatgagaatactaaacaattgtctgagctg
gagaagcagaaattgtccatccaggaggtgaggcgcagtctgcctgtcttcccctaccgt
tcagaccttctacaagctattgctaatcatcaggtccttatcattgagggggagactggt
tctggcaagacaactcagatcccccagtacctgcatgaagaaggttatacttctaaggga
atgaaggtcgggtgcactcagccaaggagagtggctgcaatgagtgtagcttctcgtgtg
gctcaggaaatggctgtgaaattgggcaatgaggtcggatacagcattaggtttgaggac
tgcacctcggagcgcacagtcctgaagtacatgacggacggcatgttgcttcgtgagttt
ctcactgagccagacttggccagttacagtgtgattattatagacgaggctcatgagcga
accctacacacggatgtgctctttggccttattaaagacattgctcgtttccgcccagac
ctcaaggtcctagtgtccagtgcaactctcaacacagagcgcttttcttccttctttgat
gatgctcccatattccgaatccctggccgacggtatccagtagacatttactacaccaag
gcaccagaggctgattacttggaggcatgtgtggtgtctgtcctgcagattcacgtcaca
cagccgactggagacatcttggtgtttttgactggacaggaggagattgaggcatgctgt
gaaatgttacaagagcgctgtcgtaggctgggatccaaaattgcagagatgctgatttta
ccaatctatgccaacctaccatctgacatgcaggccaagatatttgatcctactccacct
ggagctagaaaggttgttgtagccactaacatcgcggagacatcgctgaccatagatggg
atcatttacgtcattgaccctgggttctgcaagcagaaaagctacaatgcccgtactgga
atggagtccctcattgtcactccctgctcaaaggcgtcagccaaccaaagagcagggaga
gccggccgtgttgctgcagggaagtgtttccgactatatacagcttgggcatacaaaaat
gaaatggaagatacaactgtgccagaaatccagagaagcaacctgggaaatgtggttctg
ctgctgaagagtttaggtattaatgatctcattcacttcgacttcatggacccaccaccc
catgagacactggttctggcgctggagcagttgtatgcacttggggcccttaaccatctt
ggagaacttaccaagctcgggaggagaatggctgagctcccagtggatcccatgttatct
aagatgattctggcgtctgagaagtatggctgttcggagcagatcctgaccatcgccgcc
atgttgtctgtaaataatgcaatcttctatcgaccaaaggacaagctggttcatgctgac
accgcacgcgccaactttactgtgcctgggggagaccacatggtactgctcaatgtctac
acacagtgggtggagacgggacactctctgcagtggtgttatgagaactttattcaggct
cgttccctccgtcgcgctcgtgatgtccgggagcagctcgaagggctcatggcacggata
gaaattgagttgacatcctgcgaaggggacattgtgccaatccgcaaggcagtcacagca
ggttatttctaccacactgccaggctcacccgcagtggatacaagaccgtaaagcaacaa
cagtcagtattcatacacccgaacagcagcctacacgaggagcagccccgctgggtcata
taccatgagctggtattcaccaccaaggagtttatgagacagatcattgagatagacagc
ggctggctcctcgaagtggctccacattattacaagtccagagaactggaagatgccagc
agcaagaagatgcctaaacaagctggaaagagcaaagaggaacttggctaa
DBGET
integrated database retrieval system
