Hyla sarda (Sardinian treefrog): 130291742
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Entry
130291742 CDS
T11475
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130291742 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130291742 (SKIC2)
Enzymes [BR:
hsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130291742 (SKIC2)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130291742 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
130291742 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
130291742
NCBI-ProteinID:
XP_056396899
LinkDB
All DBs
Position
9:168147888..168256519
Genome browser
AA seq
1246 aa
AA seq
DB search
MSKLDLSSVDPLDLPLSILEVGIAGRLELITHAPNPKGSTFPLSTVPQGLPPYDVGLSYD
VIEKYLADPEWLSIHDFDRSQRSLLRSKDVGSLYHMDISAPQTELSMERNAATGELRGIS
EITIGHSGLSAQNSLSLRRPPGPPSQSVKGSTSNFPFWPGGMDEPTLEQIKAAGDEEEAL
DFEKDLLSVPPGWTHGMNFKQSDGSQPLGILPFASLLGSLEDFTLGDSSGDEDDGKAKEK
DKGTKTESLPRTNSLEDLGVETVSNTAAPPPASPAADPPQEQWAVPLNSHSPVEDFYKRI
PDLAFKHPFELDIFQKKAIECLEGGSSVFIAAHTSAGKTVVAEYAIALSLKHMTRSIYTS
PIKALSNQKFRDFKLTFGDVGLITGDVQLYTGASCLIMTTEILRSMLYNGSDVIRDLEWV
VFDEVHYINDVERGVVWEEVLIMLPEHVNIILLSATVPNTVEFADWIGRIKKRKIYVIST
TKRPVPLEHYLYTGNSQKTQNQFFLLQDATGTFQTKGYYAAVEAKKERSSKYSQTFGAKH
PHGAGHDKGTWLSLIQSLRQRDALPVVVFTFSRSRCEQNAGSLTTVDLCTANERSEIQTY
YNKCLSRLRGGDRQLPQVLHMLDLLKRGIGIHHSGILPILKEVVEMLFSRGLVKMLFATE
TFAMGVNMPARTVVFDSIRKHDGTNFRDLNPGEYIQMAGRAGRRGLDSTGMVIILCKSDV
PEMSDLHKMMMGKPTQLHSQFRLTYSMILNLLRVEALRVEDMMRRSFAEARTQKDSKAHE
QRIKVLTKTLGDMGEIECSGDLADLQDYFVTVQELVRTREMLQKKMVESMSGMKCLSVGR
IIIISTEYHAWVPGVILQVSSDATNRIYTTLVLCEKKQDGKITSAERGEKENKKAPCPDD
LLMGKVFRPEGPCDYKLLKLHPSEILMITGKTLRVHADKVLDDVARSHTPRFRNDPPGPA
VSGVTQELSRLADLPPGSLASLCPVNDLQLKEMEVVEGVSRVRRLEGALRGFSCPNSPRF
TSQYLRLEQRSQVVDELDRLRFLTSDQSLSLLPEYQQRIDVLRTLNYIDDGGAVQLKGRV
ACEVSSHELLVTELVLDGALSPLNPEEIAALLSCLVFQHKTQCEPKLTDTLKEGVKKVRD
LAERLALTQRECGLRESVEDYVAQYKFGLTEVVYEWARGMPFSEIMTLTDIQEGLIVRCV
QRLDEACRDVRSAARLVGDATLCAKMDAASQLIKRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactagatctctcttctgtcgatccactggatctcccgctttctatactggaa
gtcggcatagctgggagattggagctgatcactcacgcccccaaccctaaaggctccact
tttcctttatccacggttcctcaggggttacccccatatgacgtgggtctgtcctatgac
gtaatagagaaatatcttgctgacccagaatggctttccatccatgactttgatagaagc
cagaggtctttactccgaagtaaggatgtgggatccctttatcatatggatatcagcgcc
ccccagacggagctcagcatggaacgaaatgcagcgaccggggagctccgggggatcagt
gagatcaccattgggcacagcggcctctctgctcagaactcgctctctctccgccgtccc
ccgggacctccctcacagtccgtaaagggcagcacctccaactttcctttttggcccggg
ggtatggatgaacccactctagaacagatcaaggccgctggtgatgaagaggaagcgctg
gactttgagaaagatcttctaagcgttcctcctgggtggacccatgggatgaacttcaag
cagtcagatgggtcacagcctctggggatccttccctttgccagcctgctgggatctctg
gaagatttcacattgggcgactcaagtggggacgaagatgatggaaaagccaaagagaaa
gataagggaacaaagacagaaagtctccccaggaccaacagcctggaagacctgggagtg
gagacggtctctaacacggcggctcctccaccagcctcccctgcagcagatcccccccag
gagcagtgggccgttcccctgaacagtcattcccctgtggaggatttctataagcgtatc
ccagatctggcctttaagcatccatttgagctggacatctttcagaagaaggccatagag
tgtctggagggcggctcgtcggtcttcatcgctgctcacacgtctgcagggaagacagtg
gtggctgaatacgccatagcattatccctaaagcatatgaccagatctatatacacctca
cccatcaaggctttgtccaatcagaaattccgggattttaagttgacctttggagatgtg
ggtctgatcaccggagacgtgcagctgtacaccggggcctcctgtctcatcatgaccact
gagatcttaaggtcaatgctgtacaacggctccgatgtcatccgggacctagaatgggtc
gtctttgatgaggttcattatattaatgatgtcgagcgtggtgttgtgtgggaagaggtt
ctgataatgctgcccgagcacgtgaatatcattttactgagcgccactgtccccaacacc
gtggagtttgccgactggattgggagaatcaagaagaggaaaatttacgtcatcagtaca
acaaagaggccggtgcccttagaacattatctgtacacgggaaacagtcagaagacacag
aatcagttctttctgctgcaagatgctaccggaaccttccagaccaagggatactatgca
gcagtggaagcaaaaaaggaacggtcatctaagtactcgcagacctttggagccaaacac
ccacatggagccggacatgataagggcacctggctgtctctcattcagtctcttcggcag
agggacgctctccccgttgtggtgttcaccttctcccgctctcggtgtgagcagaacgca
ggatctctgaccactgttgacttgtgtacagcgaatgaaaggagcgaaatccagacatac
tacaacaaatgcctaagtcggctgcgcgggggcgatcggcagcttccacaggtactacat
atgctggacctcttgaaaagaggaatcgggatccatcacagtgggatcctgcctatcctg
aaggaagtggtggagatgttatttagccgtggacttgtcaagatgctgttcgccacagag
acctttgctatgggggttaacatgccggctcgtaccgtggtgtttgattcaatcagaaaa
catgatggcaccaacttcagagacctgaacccaggagaatatatacagatggccggaaga
gccggacgacgagggctggacagtactggaatggtgataatattgtgtaaatcagatgtg
cccgagatgagtgatctgcacaagatgatgatggggaagccaactcagctacactcccag
ttccgtctcacctactccatgatcctgaatctcctccgtgttgaggctctgagagtggag
gatatgatgagaaggagttttgctgaagcccgaacgcaaaaagatagcaaggcccacgag
caacgcatcaaggtcctcaccaagactctgggggacatgggggaaatcgaatgctccggg
gacctcgcagacctccaggactattttgtgactgtgcaggaactcgtccgcactagagag
atgttgcagaaaaagatggtagaatccatgagcggcatgaagtgtctaagcgtgggacgt
atcatcatcatcagtacagagtatcacgcctgggtgcctggagtcattctgcaggtgtct
tcagatgccaccaataggatctacactacgctggtgctgtgtgagaagaagcaggatggt
aaaatcacttctgcagagcgaggggagaaggagaacaagaaggctccgtgtccagacgat
ctcttaatgggcaaagtgttccgacccgaaggaccatgtgactacaagcttctgaaactc
cacccctccgaaattctcatgataactgggaaaacattaagggtccatgccgataaagtt
ctggacgatgtcgccaggagccatacccctcgtttcagaaatgaccctccgggccctgcg
gtgtctggagtgacacaagagctgtcccggctggcggacctgccccctggatcgctggcg
tccctgtgtcctgtgaacgatctgcagctgaaggaaatggaggtggtggaaggagtcagc
agagtcaggagactggaaggagccttgagaggattcagctgccccaatagcccccgcttt
acctcccagtatctccgtctggagcagcgatcacaggtcgtggacgagctggatcgtctc
cgcttcctgacttctgaccagtcgttgagcctcttgcctgagtatcagcaaagaatcgat
gtcctgcgcaccctgaactacatagatgatggcggagcagtgcagctgaagggccgcgtg
gcctgtgaggtcagcagtcacgagctgttggttaccgagctggtgctggatggggcgctg
tcacccctcaaccccgaagagatcgctgccctgctctcctgcctcgttttccagcataaa
acacagtgtgaaccaaaactgacagacacgctaaaggagggtgtcaagaaggtacgggac
ttggcagaacgattggcgttgactcagcgggagtgcggcctgagggagtccgtagaagac
tatgtcgcgcagtacaagtttggcctgacggaggtggtgtacgagtgggcccgtggcatg
cccttctcggagattatgaccctgactgacatccaggaaggcctcatcgtacgttgcgtg
cagcgtctggatgaagcttgccgggacgtgcgctctgctgctcgactggtgggagacgcc
acactctgcgccaagatggatgccgcttcacagcttatcaagagggatattgtctttgct
gcaagcctgtacacacagtga
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