Hyla sarda (Sardinian treefrog): 130291745
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Entry
130291745 CDS
T11475
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03013
Nucleocytoplasmic transport
hsq03015
mRNA surveillance pathway
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130291745 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
130291745 (DDX39B)
03015 mRNA surveillance pathway
130291745 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130291745 (DDX39B)
03041 Spliceosome [BR:
hsq03041
]
130291745 (DDX39B)
Enzymes [BR:
hsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130291745 (DDX39B)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130291745 (DDX39B)
Spliceosome [BR:
hsq03041
]
Complex C
Other components
EJC/TREX
130291745 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130291745 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130291745
NCBI-ProteinID:
XP_056396920
LinkDB
All DBs
Position
9:167781310..167809079
Genome browser
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQTGGDAPDITPKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEMLKKSCPHIVVGTPGRILALA
RNKNLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacagacgtggacaatgagctgttggactatgaagatgatgaggtcgacaac
cagaccgggggtgatgctccggacattactcccaagaaagagatgaagggatcctacgtg
tccattcacagctctggattcagagattttcttctaaaacccgagttacttcgtgccatt
gtagactgtgggtttgagcatccatcagaagttcaacatgagtgtatccctcaggccatc
ctcggcatggacattctgtgtcaggcaaaatctggcatggggaaaacagcagtgtttgtc
ttggccacattacagcagctggaacctgttacaggacaagtttccgtgttagtcatgtgt
cacaccagagagctggcctttcagatcagcaaagagtatgaacgtttctcaaaatacatg
ccatctgtgaaggtggcagtgttttttggcggcctttcaattaaaaaggatgaggagatg
ctgaagaagagctgtccccatattgtggtgggcaccccaggccgaattctagcgctggca
agaaacaagaacctgaatctgaaacacatcaaacactttatcttggatgaatgcgacaag
atgttagaacagctagacatgcgcagagatgttcaagaaattttccgtatgacccctcat
gagaagcaggtcatgatgttcagcgccaccctgagcaaggagatccgcccagtctgccgg
aagttcatgcaagatccaatggaaatcttcgtggatgacgagaccaagctgacccttcat
ggcctgcagcaatactacgtcaaactcaaggacaatgagaaaaaccgcaaactttttgac
ctcctggacttgttggagtttaatcaggtggtcatcttcgtcaagtccgttcaacgctgc
atcgctctggctcaactcttggtggaacagaactttccagcaattgctattcatcgtggg
atgcaacaagaggagagattgtcccgataccaacaattcaaggatttccagcgcagaatt
ctggtggccacaaatttgtttggtcgtgggatggatattgaaagagtgaatatcgctttc
aattatgacatgccggaggactctgatacctatctgcatagggtggcacgagccggcagg
tttggtaccaagggtctcgccatcacattcgtctctgatgagggagatgcaaaaattctg
aatgaggttcaagatcgttttgaggtcaacatcagcgagctgcccgatgagattgacatt
tcatcatacattgaacagacgcgatga
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