Hyla sarda (Sardinian treefrog): 130295220
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Entry
130295220 CDS
T11475
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq04137
Mitophagy - animal
hsq04140
Autophagy - animal
hsq04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130295220 (HIF1A)
04137 Mitophagy - animal
130295220 (HIF1A)
04148 Efferocytosis
130295220 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsq03000
]
130295220 (HIF1A)
Transcription factors [BR:
hsq03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130295220 (HIF1A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
130295220
NCBI-ProteinID:
XP_056401711
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Position
11:43509124..43611374
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AA seq
805 aa
AA seq
DB search
MEGIGVTDKKRISSERRKEKSRDAARCRRGKESEVFYELSHQLPLPHNVSSHLDKASIMR
LTISYLRIRKLLDAGDTDSESELEKQLNCFYLKALEGFVLVLTEEGDMIYLSENVNKCMG
LTQFELTGHSVFDFTHPCDHEELREMLTFRNGPAKKGKEQITERSFFLRMKCTLTSRGRT
VNIKSATWKVLHCTGHMRVYDSCNNQNHCGYKKPPMTCMVLICEPIPHPSNIEFPLDSKT
FLSRHSLDMKFSYCDERVTELVGYEPEELLGRSVYEYYHALDSDHLTKAHHDMFTKGQVT
TGQYRMLAKQGGFVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVEKDLILSIGQTESSL
APAESIEIKMPAIFTHLGKEDDVSSSLFDELKKEPESLTVLAPDAGDEIIALDFSSSDSE
QHFDEVPLYNDVMMHPTSKLPESMLVSPIPPPEKPKPLRSNADPALNREVAIKMESTPEQ
LELAFTMPQLSKPSSPSDISSSQSSTEPGTPAEYCFDVDSEISREFKMDLVEKLFAIDTE
SKTPFSTQETDLDLEMLAPYIPMDDDFQLRTFDQLSTLETESAHPQPLGHMTNLIQTTTA
PITTDLKPITTEAMSDPKTIIVHSPAQVMKEVLSAPSSPYSGNQSRTSSPVRTDKTLEKT
DRSRPGTPNIQSPLNKRSTFLDEDISPKMIALQNVQRKRKIESDGPLFQAVGIGSLFQTT
VDPGPSSSLSWKRVKGPDLERLTGAEQRTILLLSTDMAGRLLGKSLDRTGLPQLTSYDCE
VNAPIQGNRNLLQGEELLRALDQAN
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggagggaataggagtcaccgacaagaagaggatcagttcggagcgtcggaaggagaaa
tccagagatgcagccaggtgtcgtagaggtaaagagtccgaggtcttctatgaactttcc
caccagctaccgttgcctcacaatgtcagctctcaccttgataaagcctccataatgcga
ctcaccatcagttacctgcgtataagaaaactgctcgatgcaggtgacacagattctgaa
tctgaactggagaagcagcttaactgcttttatctgaaggccttggaaggatttgtcttg
gtcctgaccgaagaaggagacatgatttacctttctgagaatgtcaacaagtgcatgggg
ctaacacagtttgaacttactgggcacagtgtatttgacttcacccacccatgtgaccat
gaagaactccgggagatgctaacctttaggaatggaccagctaaaaaggggaaagaacaa
atcacagagcggagcttcttcctgcgaatgaagtgcacgctgaccagtcgaggaagaacg
gtcaatataaagtctgccacgtggaaggtccttcactgcacaggacacatgcgggtctat
gactcctgcaacaaccagaaccattgtggatacaaaaagccacccatgacctgcatggtg
ctgatctgcgagccaatccctcacccatcaaatattgagtttccattggacagtaaaacc
tttcttagccgccacagccttgacatgaaattctcatactgtgatgaaagggtaacagaa
ctggttggatatgagccagaagagcttcttggaaggtctgtgtatgagtattaccatgca
ctggactctgatcacctgactaaagcacatcatgacatgtttactaaaggacaagtgact
acaggacagtatagaatgctggcgaagcaagggggctttgtttgggttgagacccaagcc
actgttatttacaacacaaagaactcccaacctcagtgcattgtatgcgtcaactacgtc
ttgagtggcattgtggagaaagacctgatactgtccattgggcagacagagtcctctctg
gcgcctgctgagtctattgaaataaagatgcctgccatctttactcacctgggcaaagag
gatgacgtctctagcagcttgtttgatgaattgaaaaaggaaccagaatcacttactgtc
ctcgctccagacgctggggatgagatcattgcactagacttcagttctagcgattctgag
cagcactttgatgaagttccattgtacaatgatgtaatgatgcacccgaccagtaagcta
ccagagagcatgttggtgtctcccatcccacctccagagaagcctaagcctctacgcagc
aatgctgaccctgcactaaatagagaggttgctataaagatggagtcaactcctgaacag
ctggagctggcgttcaccatgcctcaactctccaagccatccagcccatcagacatcagc
agcagccagagctccacagagcctggcacacctgcagagtactgttttgatgtggacagt
gaaatttccagagagtttaagatggacttagtggagaaactctttgcaatagacaccgaa
tcgaagactccgttctccacacaggaaacagatttagatctggaaatgttggctccttac
atcccaatggatgatgatttccagctaaggaccttcgatcaactttccaccttagagact
gaatcagcgcaccctcagcctttaggacacatgaccaacctgatccagacgaccaccgca
cccattaccactgatttaaaaccaatcaccactgaggcaatgagtgaccccaagaccatc
atcgtacactcacctgcccaagtgatgaaagaggtgcttagtgcgccgtcctcgccgtat
agtggtaaccagagtcgcacaagttctcctgtacgaacagacaaaactttagaaaagaca
gacagatcccgcccgggaactccaaatatacaaagtcctttaaataaaagatctacattc
ctggacgaggacatcagcccaaagatgattgcattacaaaatgtccagagaaaacgtaaa
attgaaagcgatggtccattgtttcaagcagtgggaattggctctttatttcaaacaact
gttgacccagggccgagctcttctctctcatggaaacgtgttaaaggacctgacctggaa
cggctaactggagccgagcagagaacaattctcctattgtccacagatatggccggtcga
ttgcttggaaagtcattggatcgcactggacttcctcagctgaccagttacgactgcgag
gtgaatgcccccattcagggaaacagaaacctgctacagggggaggaattattaagagcc
ctcgatcaagctaactga
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