Hyla sarda (Sardinian treefrog): 130296474
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Entry
130296474 CDS
T11475
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
hsq
Hyla sarda (Sardinian treefrog)
Pathway
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130296474 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsq03041
]
130296474 (DDX42)
Enzymes [BR:
hsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130296474 (DDX42)
Spliceosome [BR:
hsq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130296474 (DDX42)
Complex B
130296474 (DDX42)
Complex C
U2 SnRNP specific factors
130296474 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130296474
NCBI-ProteinID:
XP_056404008
LinkDB
All DBs
Position
12:complement(49541757..49575653)
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AA seq
949 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFALSVGKKEEPKLPQVSHSAFRAATSTYGSANSNQLPSFYKI
GSKRANFDEENAYFDDEEEDSNVDLPYIPAENSPTRQQLRTKTTDSDSEEDPLEAFMAEV
EDQAARDMKKLEEKDKEMKNARGIRDDIEEEDDQEAYFRFMAENPTAGLQPEEEEDTLEY
DSDGNPIASTTKRIIDPLPPIDHSEIEYPPFEKNFYIEHEEITAQTPQQIVELRHKLNLR
VSGAAPPRVASSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSG
KTAAFIWPILVHIMDQKELQTGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYIVFDEADRMFDMGFEYQVR
SIANHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQVVEILPSGP
DKWTWLTRRLVEFTSTGSVLLFVTKKANADELANNLRLEDHQLGLLHGDMDQSERNKVIT
DFKKKNIPILVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TPKDSNFAGDLVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNVGGGGLGYRE
RPGLGAETSERGIGGGVMSNYEAFKPTGGAMGDRLTAMKAAFQSQYKNHFVAASLNTQKT
GTSTVNSGAWTSAGSLNSIPNSSPQPLPASSEPVLPTSRAMPGFTSSGTLSSIPMAYPSM
GNPSFPATGQYSSKEGSSGSSSSSSSSKESSGSRDKYSEGRGRHGDSQRHGDGHRHSDRD
GHRHGDGHRHSSSGRHSESRNGGEMRRESDGRKESSRDSEGRRESSRDKDDSRRDSYGDS
RKESSRDGESRRESSRDGDSRREGSRDDGKGETFAIPDPPKRKKSRWDS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaagggggtccgagcggcaaacgcggttttggctttggtggctttgcc
ctttctgttggaaaaaaggaagaaccaaagctcccacaggtgtcccatagtgctttccgc
gctgcaacgtctacctatggctctgccaatagcaaccagcttccatcattctataagatt
ggatctaagcgtgccaactttgatgaggagaatgcatactttgatgatgaggaagaagac
tccaatgtggacctgccctacatcccagcagagaattctccaaccagacagcagcttcgt
accaaaaccacagactctgacagtgaagaagatcctctagaggcctttatggcagaagtt
gaggaccaggctgccagagacatgaaaaaacttgaggaaaaagacaaggagatgaagaat
gcaaggggtatcagggatgacattgaggaggaagatgaccaggaagcttatttccgattt
atggctgagaacccaacagctgggctccaaccagaggaggaagaggacactcttgagtat
gacagtgatggtaaccctattgcctcaaccaccaaacgcattattgatcctctcccaccc
atagaccattcagagatagagtatcctccttttgagaagaatttctatatagaacatgag
gagatcaccgcccagactcctcagcagattgtggagctgagacataaacttaacctgcgg
gtctctggggcagctcctccacgtgtagccagcagctttgctcactttggatttgatgaa
cagcttatgcatcagattagaaagtctgaatacacccagcccacacccatccagtgtcag
ggtattccagtggcacttagtggacgagacatgatcggcattgccaaaactggaagtggt
aaaacagcagcatttatctggcctattctagtacacattatggaccagaaggagctacag
acaggagatgggccaattgccgtcatagtgtgtcccacacgcgagttgtgtcagcagatt
cacagtgagtgtaagcggttcggaaaagcctacaatctgcgttctgtggccgtgtacgga
ggaggcagcatgtgggaacaggcgaaggctctgcaagaaggggcagagatagtcgtctgc
acaccgggacgtcttattgaccatgtaaagaaaaaggcgaccaacctacagagggtcacc
tacattgtattcgatgaagctgatcgcatgtttgacatgggttttgaataccaagttcga
tctatcgctaaccatgtgagacccgaccgacagaccttgctgtttagtgccacgttccgg
aagaagattgagaagctggccagagatattctgatcgatcccatccgtgttgttcagggt
gatattggagaggccaatgaagacatcactcaggtggtggaaattctcccctctggtcca
gataagtggacctggctgactcgcagacttgtggagttcacatccacagggagcgtcctc
ctgtttgtcaccaaaaaagctaatgctgacgagcttgccaacaacttgcgcttggaggat
catcaattgggacttcttcatggggacatggaccaaagtgaaaggaacaaggtcatcaca
gacttcaagaagaagaatatccctatcctggttgctacagatgttgctgccagaggtctg
gatattccatcaatcaaaactgtcgtcaactacgatgtagcgcgagacattgacactcac
actcaccgcattggtcgtacgggcagagcaggtgaaaaaggtgtggcctatacactttta
acaccaaaagacagcaactttgctggagatttagtgaggaatttggagggagccaatcaa
tacgtctccaaggagctgctggatctggctatgcagaattcttggttccgtaaatcccga
tttaaggctggaaaaggcaagaaactgaatgttggtgggggtggacttggctatcgagaa
cgtcctggacttggagcagaaacttctgaacgtggaattggtggtggtgtaatgagtaac
tatgaggccttcaaacctacaggaggagccatgggagatcgactcactgccatgaaggcg
gcatttcagtcacagtacaaaaatcattttgttgctgctagcttgaacacacagaaaaca
ggaacttcgaccgttaactctggagcttggacaagtgcgggcagcttaaattcaattccc
aattcttcaccccagcctcttccagcatcatctgaaccggttctacctacctccagagca
atgcctggctttaccagcagtggaaccctcagcagtatcccaatggcttatccatccatg
ggtaatcccagcttccctgccaccggccagtatagtagtaaggaggggtctagtggcagt
agcagcagtagtagcagtagcaaagaaagcagtgggagccgtgataaatacagtgaaggt
agagggagacatggggatagtcagcggcatggagatggacatcgccatagtgacagagat
ggacatcgccatggagatgggcatcggcattccagcagtggcagacatagcgaaagtcgt
aatgggggtgaaatgaggagagagagtgatgggcgaaaggagagttcccgggatagtgag
ggaagaagagagagctcacgggacaaagatgacagccggagagacagctatggagacagt
cggaaagagagctccagagatggagaaagccgtcgagagagctcacgagatggagacagt
cgcagagaaggatcccgagatgatgggaaaggggaaacttttgctataccggatcctcct
aagcgcaaaaagagccgatgggacagttaa
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integrated database retrieval system
