Hyla sarda (Sardinian treefrog): 130352882 Help Entry 130352882         CDS       T11475                                  Symbol HTT Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism hsq  Hyla sarda (Sardinian treefrog) Brite KEGG Orthology (KO) [BR:hsq00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hsq03019]     130352882 (HTT)    04131 Membrane trafficking [BR:hsq04131]     130352882 (HTT)    03029 Mitochondrial biogenesis [BR:hsq03029]     130352882 (HTT) Messenger RNA biogenesis [BR:hsq03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      130352882 (HTT) Membrane trafficking [BR:hsq04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     130352882 (HTT) Mitochondrial biogenesis [BR:hsq03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     130352882 (HTT) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Other DBs NCBI-GeneID:  130352882 NCBI-ProteinID:  XP_056410997 LinkDB All DBs Position 1:49976119..50246954 Genome browser AA seq 3100 aa AA seqDB search MATMEKLMRAFESLKSFQQQGPAVVEEPVHKAKKEPSTNKKDRVTHCLTICENIVAQSLR NSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVVKALMDSNLPRLQLELYKEIKK NGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTKICKRQEESVQETLAAAIPKIM AAFGNFANDHEIKVLLKAFIANLKSSSPTIRRTAAGSAVHICQHSRRTQYFYTWLLNVLL GLLIPVEDERPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVMRKEADISPSVEQLTQ IYELTLHYTQHRDHNVVTSALELLQQIFRTPPIELLHVLTTSGGIPHVSVCRDEAQGRSR SGSIVELIAGGSSTCSPVLSRKLRGKLHLGEEEGLEDETEPKPDVTSASFVAGVKNEESS DMGASSAAATSSPDSTTHDIITEQPRSQHTLQSESVDLSSSDMASTVTEGDEEDMLSRSS SQISTVQSDANMELNEGTTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVIDGAENQYSGM QIGQLQDEEDEGALIDQGEPGDHFGNPSLGLNQSHLLKTMGHSRQSSDSSVDRFVSREET VEPGDLENKPSRIKGDIGHYTDDDAAPLVHCVRLLSASFLLTGQKGAMVPDKVVRVSVKA LALSCVGAAVALDPEAFFSRLYKPQPESLDHPETQYVTDILVYINHGDPQVRGATSILCG TIVYSILTKSRYDAEHWLTVVKNRKGNNFSLEDCIPVLQKSLKDESSVTCKLACSAVRHC ISSLCCSTYSQLGLQLIIDLLTLKNSSYWLVRTELLETLAEIDFRLVSFLEGRAEGLHRG VHFYTGLLHLQERVLNGVIISLLGDEDARVRHVAAASLVRLVPKLFYSCDQGQADPVVAA ARDQSSVYLKLLMHETQPASHFAVSTITRIYRGYNILQGPTDVSMENNLSKVITAVSHAL TTSSTRALTFGCCEALALLSTAYPICTWSVGWHCGYIISSGAQASRIQVYKNRGRSFSIS QQSPLEEPRKSCTAGMANMILSLLSSAWFPLDLSAHQDALILTGNLLAATAPKSLKNPWT PEDEANQGANKQEEPWPALGDRLIVSMVDQLFVHLLKAINICSHVIDDVTPGPVVKATLP SLTNPPSLSPIRRKGKEKESVEQTAVPLSPKKSTDPTPASRQTDASGPAQASKSVGSFYH LPSYLKLYDVLKATYANYKVTLDLQNNNEKFGSFLRSALDVLSQILELATLHDIGKCVEE ILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFEALSSNPGKSQGKAQRLGSSNLRP GLYHYCFMAPYTHFTQALADASLRNMVQADQEQDTSGWFDVLQKVSSQLKNNITNVTKHR ADKNTIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFI GFVLKQFEYIEVGQFRESEAIIPNVFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGR KAVTHAIPALRPIVHDLFVLRGANKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVL QQCHKENEDKWKRLSRQIADVILPMLAKQQMHIDSHEALGVLNSLFETLAPSSLRPVDML LRSMFVVPYTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPLLISCQNIT RLRDNNNHQNSEEEQYQIKVPPEETFSRFLLQLVGILLEDIVHKELKVELSEQQHMFYCQ QLGTLLMCLVHVFKSGTFRRITNAATRLFKSSGDNGTFYTLESLSDLVESLFPTHPSLVL LWCQFLLLIDYTNYNWWSEVHQTLKRNNLSSTKLLLSPQMSTDSDEAESRSKLGMCNREI VRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAIHRNSAASGLF IQAIQSRCENLATPASLKKTLQCLEGIHLSQSGAVLLLYIDKLLCTPFRVLARMVDTLAC RRVEMLLAATLQNSMCQLPIEELDRMQEYLQNSGLAQRHQRLYSLLDRFRSTVAPETVSP LPVVTSHPLDGENPPRLETLEPDEAWYVSLVRSQCYTHSDSALLEGAELVNRIPPSERLS LMASKEFNLSLLASCLSLGVNQIIGDQNSTFFEITRSVLLDLISQTVQQLPDTHQLFQPL QPLDGSSYWEKLSLMLGDADVYYSLVTLCRALVQYLLSLPKIPPSFHISQEKEADIVKFM VLSVEAVSWHFVHGQIPLSVDLQAVLDCCCLTLQQPVLWTLLASAEYLTHACSLICSTRF IIEAVAVKPGEQLLIPERKKNSSSDEGESDAAFVRTACIMMSEMVDSLQTVLLFGHKRNG NIAAFLTPVFRNIVISLARLPAVNSYTRVPPLVWKLGWSPKTGGEFGTSLPEIPVEFLQE KEVFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPIVMDQEESQQEEDTERTQINVLA VQAITSLVLSAMTIPSAGNPAISALEQQPRNKTLKALDTRFGRKLSVVRGIVEQEIQSMI SRRDNIATHHAYQAWDPVPCLSAATTGALISHEKLLLQINTEREIGNMSYKLGQVSIHSV WLGNNITPLRQEELDEDEEDENDTPAPSSPPTSPINSRKHRAGVDIHSCSQFLLELYSQW ILPSNTGKKTPVILISEVVRSLLAVSDLFTERNQFEMMYTALTELQKQHPSEDEILIQYL VPAICKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYVLECDLLDDTAKQL IPIISDYLLSNLRGIAHCVNLHNQQHILVMCAAAFYLIENYPLDVGSEFTAGIIQMCGVM VSGSEESTPSTVYHCVLRGLERLLLSEQLSRLDGEALVKLSVDRVNMHSPHRAMTALGLM LTCMYTGKEKISPGRTTEPSPAAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQ FLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVMLSLSN FTQRTPVAMAMWSLSCFFVSASTSKWISAILPHVISRMGKSEPVDINLFCLVAIDFYKHQ IDEELDRRAFQSVFELVAAPGSPYHSLLTCLQNVHKITVC NT seq 9303 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaagctgatgagagccttcgagtccctaaagtccttccagcagcag ggaccggcggtagtggaggagccggtacataaggcaaagaaagaaccttctacgaacaaa aaagatcgagtgactcattgtctgacgatatgtgagaacattgttgctcagtctctcagg aattctcctgagtttcagaagctgcttggcattgccatggagctcttccttttgtgcagt gatgatgccgagtctgacgtcaggatggtggctgatgaatgcctcaacaaagtggtgaaa gctttgatggactccaatctcccacggctacagctagagctgtacaaagaaataaagaag aatggagcaccccggagccttagggcggccctctggaggtttgccgagctagcacacctt gtacgaccacaaaagtgcagaccctacctggtgaacctgctcccctgcctcaccaaaata tgcaaacgtcaggaagaatcggtacaagagactcttgctgctgccattccaaaaattatg gctgcctttggtaactttgcgaatgaccatgaaatcaaggttttgctgaaagcgttcata gccaatctgaaatctagctctcccacaatccgacgcacagcagctggttctgctgtccac atctgtcagcattcccggcgaacgcagtatttctacacatggcttctcaacgtactcctg ggattgttgattcctgttgaggatgaacgccctactcttttgattctgggtgtcttgtta acactacgctatctaattccactactacagcagcaggtgaaggacaccagtctgaaggga agctttggggtgatgcggaaagaggctgatatctccccatcagtggagcaactaacacag atttatgaactgacattacattacacccagcaccgggatcataatgtggtgacgagtgca ctggagctgctgcagcagatattcaggacgcctcccatcgagcttctccacgttctgact acgtctggaggcattccacatgtcagcgtatgtcgagatgaagctcagggccgcagccgc agtggaagcattgtagagctcatagctggcgggagctctacctgcagccctgttctgtcc aggaaactaagaggtaaactccacctgggtgaggaggaaggccttgaagatgagacagaa ccaaagcctgatgtcacttcggcttcattcgtagctggtgttaaaaacgaggaatcttct gacatgggagcatcttctgcagctgctacctcttctccagactcaacaactcacgatatt ataacagaacagccgcggtcacagcatacactgcagtcggagtctgtagacctgagcagc tctgacatggccagcacggtgactgaaggcgatgaggaggacatgttaagccggagctca agtcagatcagcactgtccagtctgatgcaaacatggaattaaatgagggaaccactcag gcttcctcaccagtgagcgatagctcacagaccaccacagaaggtccagattctgctgtg accccttcggacagttcggaaattgtgattgatggtgctgagaaccagtattctggaatg cagatagggcagcttcaggatgaagaagatgaaggggcacttattgaccagggagaacca ggagatcactttggaaatccatctcttggtcttaaccagagtcacctgttaaaaaccatg ggccacagtcgtcagtcctctgatagtagcgttgatcgctttgtctccagggaagaaaca gtggagccaggagacctggaaaataagccttccaggataaagggggacattggacactac actgatgatgatgcagcaccccttgttcactgtgtacgtctattatctgcttccttcctg ctcactggacagaagggggcaatggttcctgataaagtggtgcgggtcagtgtgaaggcg ttagcattgagctgtgttggggcagctgttgccctggaccctgaagctttctttagcaga ctttacaagccgcagccagagagtttagaccatccagaaacacagtatgtaacagacatc ctggtctacattaatcatggggatccccaggttagaggagccacgtccattctctgtggt accattgtctattccatactgaccaagtcacgatatgatgcagaacattggctgactgtt gtcaaaaaccgaaaaggaaataacttttctctggaagattgcattcccgtattgcaaaaa tcccttaaagatgaatcatcagtcacgtgcaagttggcctgttcagcagtgaggcattgc atatccagtttatgttgtagtacatacagccagcttggtttgcagctgatcatagatctg ctcacacttaagaacagttcttactggcttgtgaggacagagctcctggaaactctggca gaaattgatttccggttagtcagtttcttggaaggccgagctgaaggactacatagaggt gtccatttttatactgggttgctgcatcttcaggaacgtgtactaaatggtgtcatcata agccttctaggggatgaagatgcccgggtgagacacgtagcagcggcctccttggttcgg ctagttccaaagttattttacagctgtgatcaaggacaggccgatcctgtggtggcagca gctcgagaccagagtagtgtttatctgaagcttcttatgcacgagactcaaccagcttct cattttgcagttagtacaatcaccaggatctacagagggtacaatattctacagggtcca acagatgtcagtatggagaataacttgtccaaagttatcacggctgtgtcccatgcatta accacatcgtccactcgtgctctcacgtttggatgctgtgaagctttagctcttctttca actgcatatccaatatgtacatggagtgttggttggcattgtgggtacatcatatcttct ggtgcacaggcctcgcggatccaagtgtataagaacaggggtcggtccttcagcatttct cagcagagcccattggaggagcctcgtaagagctgcacagccggcatggccaacatgatc ttgtcactgctgtcatctgcctggttccccctagatctctctgctcatcaggatgcattg attctcactggaaaccttttggctgcaacagctccgaaatctttgaaaaatccatggaca cctgaggatgaagcaaaccagggagctaacaaacaggaagaaccatggcctgcacttggt gaccgcttgatagttagtatggtggatcagctgtttgttcacttactgaaggccatcaac atatgctctcatgtgattgatgatgtcactcctggacctgtggtaaaggcaacgctgcca tctcttactaacccaccctctttaagtcccatacgtcgaaaaggaaaagagaaggaaagc gtagagcaaacagccgtgccattaagtccaaagaagtccactgatcccaccccagcttct aggcagacagatgcttcaggtccagctcaagcaagcaaatctgttggcagcttctatcac cttccatcatatttgaaactatacgatgtgttgaaggccacatatgccaactacaaggta accctggaccttcagaataacaatgagaagtttgggagtttcttgcgttctgcccttgat gtgctatcacagattttggagcttgctacactacatgatattggcaaatgcgttgaagaa attttgggttatcttaagtcctgtttcagccgtgaacctgtgatggccactgtctgtgtt cagcagctattaaagacactatttgggactaatttggcatcacagtttgaggctttatct tccaaccctggtaaatcacaaggcaaagcccagcgcctgggctcctctaacctgcgacct ggtctctaccattactgctttatggcaccctacactcattttacccaggcattggcagat gccagtctgagaaatatggttcaggctgaccaagagcaggacacatcaggatggtttgat gttctccagaaagtttcttcccaactaaagaacaacattaccaacgttactaagcatcgt gctgacaagaatactattcacaatcacatccgcctgtttgagcccctggtaataaaagcc ttgaagcagtacaccactactacatctgtgcaacttcagagacaagtcctcgacctgctc gcccaacttgtccagcttcgtgtcaactattgtctgttggattctgaccaggtcttcatt ggctttgtactgaagcagtttgagtacattgaagtgggtcagttcagagaatctgaagcc atcattcctaatgtattctttttcctggttttgctgtcctatgagcgctatcattccaag cagattattggcattccaaaaatcatccagctctgtgatggtataatggccagtgggaga aaagctgtgacccatgctattccagctctgcggcccatagtccatgacctgtttgtatta aggggagcaaataaagctgatgctggaaaagaactggaaactcagaaagaagttgtggtg tcaatgctgctacggctgatccagtatcatcaggttctggagatgttcatattggtgctg cagcagtgtcacaaagagaatgaagataagtggaagaggttatctcggcagatagctgat gtcatcttacccatgttggcaaagcagcagatgcacatagactctcacgaagctctgggg gtattgaatagtttatttgaaaccttggccccttcctccctacgtcctgtagacatgttg ctgagaagcatgttcgttgttccttatactatggcctccgtgagcactgtccagctatgg atatctggaatcttggccattcttcgagtccttatctcacagtctacagaggacattgta ttgtccaggatccaggagctgtccttctcacctctcctgatctcatgtcagaatatcact cgattaagggacaacaacaaccatcaaaactcagaagaggagcagtaccagatcaaagtt cctccagaggaaactttttcacggttccttttacagctggtgggaatactgctggaagat atagtgcacaaggagctaaaggtggaactgagcgaacagcagcatatgttttactgccaa cagctgggaaccctacttatgtgcctggtccatgtcttcaagtctggaacattccgaaga atcactaatgcggccacaagattgttcaagagtagtggcgacaatggaaccttctacaca ttggagagcttaagtgacttggtggagtccttatttcccacccatccatctctagttctt ctctggtgtcagttcctgctgctgatcgactacacaaactacaactggtggtcagaagtc caccagacccttaagagaaacaacctgtccagtaccaaactgctgctgagccctcaaatg tcaaccgacagcgacgaggcagagtcacgctccaagcttggcatgtgcaaccgtgagata gtccggcggggtgccctcattttgttctgtgactacgtgtgtcagaacttgcacgactct gaacatctgacctggctgatcgtgaaccatgtgcaggatctgatcaatttatcacatgaa cccccagtacaggactttattagtgcaatacacaggaattctgccgccagtggcctcttc atccaagcaatacagtcccgctgtgagaacttggcaacaccagcttccctgaagaaaact ctgcagtgtttagaaggcattcacctgagccagtctggtgcagtgttattgctgtatatc gacaagcttctgtgtactccgttccgtgtgctggctcgcatggtggatacgctggcgtgt cgtcgggtggaaatgctgctggctgctactctacagaatagcatgtgtcagttacctata gaagagttggataggatgcaggagtatttacagaacagtggattagcacaaaggcaccaa agactttattctctgctggacagatttcggtcaactgtggcaccagaaacagtcagccca ttacctgtagtgacctctcacccgctggacggggaaaatccaccacggctggagacgttg gaacctgatgaggcttggtatgtgtccctggtacgatcgcagtgttatacacactctgat tctgcactgctggaaggagcagaattggtgaatagaatccctccatctgagcgtctctcc ctcatggccagcaaggagtttaacttaagcctgcttgcctcttgtttgtccttgggagtg aaccaaataataggggatcagaatagcactttttttgaaatcacaaggtccgttctcctg gatctcatctcacagactgttcagcagcttccggacactcatcagctctttcagcctcta cagcccttggatggaagctcctattgggaaaagcttagcctcatgttaggtgatgcagac gtctactactctcttgtcaccctctgtcgagcgctggtgcagtatttgctgtctctacca aaaatacctccatcctttcatataagccaagagaaagaagcggacatagtgaagttcatg gtcttgtcagtggaggcggtgtcctggcattttgtacatggacagatcccgctgagcgtg gatctccaggctgttctggattgctgctgtctcaccctccagcagcctgtcctgtggact ctgctggcctctgctgaatacctgacacacgcctgttcactcatctgcagcacacgcttc atcatagaggccgttgcagtcaaacctggggagcaacttctgatccctgaaaggaagaag aacagttcatcagatgaaggggaatcagacgcagcttttgtcaggactgcctgcatcatg atgtctgaaatggtggattccctgcagaccgttttgttatttggacacaagcgaaatggc aatatagcagcattcctcactccggtgttcagaaatatagtgatcagcttggccagatta cctgcagttaacagctatacaagagtacctccgctggtgtggaaacttggatggtcgcct aagacaggaggagaatttggaacatcgctccctgaaatccctgttgagttcttgcaggaa aaagaagtattcaaagaatttatataccgcataaacacactgggatggacaagccgtacc cagtttgaggagacatgggccactctgcttggtgtgctggtgactcagcctattgtaatg gaccaagaagaaagtcagcaagaggaagacacagagagaactcaaataaatgtcctggcg gtgcaggccatcacgtccctagtgctaagtgccatgaccattccttctgccggcaatcca gccatcagcgccttggagcagcagccacggaacaagactttaaaggctcttgataccagg tttggcagaaagctgagtgttgttagaggaattgtggagcaggaaatccaatcgatgata tctagaagggacaatatcgccacacaccatgcttatcaagcatgggaccctgtgccttgt ttatctgctgcaaccacaggagctctgataagtcacgagaagctcttactgcagatcaat acagaacgtgagatcgggaatatgagctataagttgggccaagtctctatccattctgta tggctgggaaacaatattacccctctgagacaagaggagcttgatgaagatgaggaggat gagaatgataccccagccccgtcctccccaccaacatctcctataaactccaggaaacat cgtgccggagttgacatacattcctgttcacaatttcttcttgagctctacagccagtgg attcttccatctaatacaggcaagaagaccccggtcatcctgatcagtgaggtggtaaga tcgttgctggcagtgtctgatctatttactgagagaaatcagtttgagatgatgtacaca gcattaaccgagctccagaaacagcacccgtctgaggatgaaattctcatccagtatcta gtgcctgcgatctgcaaagctgcggccgtgctgggaatggataaggctgtagcagagcct gtcagccgcctcctggagtccacgctgcggagcactcacatgcccagccgcatcggagca ttacatggcatcctgtatgtgctggagtgtgacctgctggatgacacagccaagcagctc atccctatcatcagtgactacctgctttccaatctgaggggcattgcacactgtgtcaat cttcacaatcagcagcacattctagtgatgtgtgcggccgcgttctacttgattgagaac taccctcttgatgtcgggtcagagttcactgcaggcatcatacagatgtgtggggtgatg gtgtcggggagtgaagaatcgacaccttccacggtataccactgtgtcctgaggggcttg gagcgcctcctgttgtctgagcagctctcaaggttggatggcgaagcattggtgaagctg agcgtggacagagtcaatatgcatagtccccacagagcgatgactgctttaggtctaatg ctgacctgcatgtacacagggaaagagaagatcagccctggacgtacgacagagccaagc ccggcagcaccagacagcgagtctgtcattgtcgccatggaacgggtgtctgtgctgttt gacaggatacggaaaggattcccgtttgaggctagagtcgtggcaagaatcctccctcag ttcctggatgacttcttcccgcctcaggatgtaatgaacaaagtcattggggagttttta tccaaccagcagccctatccgcagttcatggctaccgtcgtgtataaggtgtttcagaca ttacacgccacaggacagtcttccatggttcgggattgggtcatgttgtccctctcaaac ttcacgcagaggacgccggtcgccatggcgatgtggagcctttcctgcttcttcgtcagt gcttcaaccagcaagtggatctctgcaattttaccgcatgtgatcagcagaatgggcaaa tcggagcctgtagacatcaacttgttctgtttagtggccatagacttttacaagcatcag atagatgaagaactggaccgcagagcctttcagtcggtatttgagctggtggcggccccc gggagcccctatcacagcctcttgacgtgcttacagaacgtgcacaagattactgtttgc taa

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