Hyla sarda (Sardinian treefrog): 130356757
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Entry
130356757 CDS
T11475
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130356757 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsq03041
]
130356757 (PRPF8)
Spliceosome [BR:
hsq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130356757 (PRPF8)
Complex C
U5 SnRNP specific factors
130356757 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
130356757
NCBI-ProteinID:
XP_056414661
LinkDB
All DBs
Position
2:complement(393539084..393572364)
Genome browser
AA seq
2336 aa
AA seq
DB search
MAGVFPYRPGVPPMPGGPPPLAPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKE
DMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVL
YHITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYA
DNILDVEPLEAIQLELDNEEDASVIDWFYDHQPLRDNRKFVNGTTYQRWQFTLPMMSTLY
RLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDI
NKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPI
SHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYSDNTANGIALLWAPRPFNLRSGRTR
RAVDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKAT
KFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSR
FGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLM
RQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQ
FEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKHNKARTILQHLSEAWRC
WKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRL
TRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLL
ILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFM
DLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGI
NNLQDVWDTTEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINY
KDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDVAT
ESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDAR
MRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPK
CRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKI
VNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTP
KELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEF
IDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVR
TDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWE
GLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTG
IFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKS
YKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERY
ARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKIMKANPA
LYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLT
TKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPK
QIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNL
YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKV
EVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQL
TATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKE
TGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHL
PSQLPQHEYLKEMEPLGWVHTQPNESPQLSPQDVTTHAKVMADNPAWDGEKTIIITCSFT
PGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQASW
NYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atggctggggtgtttccatataggccaggggtgcccccaatgcctggtggcccccctccc
ctagcacccgattacatgtcagaagagaagctgcaggagaaagcccggaaatggcagcag
ctccaggccaaacgttatgcagaaaaaaggaaatttggctttgtggatgctcagaaagaa
gacatgcctcctgaacatgttcggaaaattatccgtgaccatggcgacatgaccaacaga
aaattccggcacgataagagagtctatcttggagctttgaagtacatgcctcatgcggtg
ctaaaactgctggaaaatatgcccatgccatgggagcagattagagatgtgccagtgctg
tatcatatcacaggagccatttcatttgtcaatgagattccttgggttattgagcctgtc
tacatagcacaatgggggtcaatgtggattatgatgaggcgagaaaagagagacagacgg
cacttcaagagaatgaggtttcctccttttgatgatgaggagccaccgctggattatgct
gataacattcttgatgtggagcccctggaagctattcagctagagctggacaatgaggaa
gatgcttcagtcatagactggttctatgatcaccagccactaagggataacagaaaattt
gtcaatggtacaacataccagcgctggcagttcactcttccaatgatgtctacactgtac
cgacttgccaatcagctgctcacagatctagtagatgacaactacttttacctatttgac
ttaaaagccttctttacatccaaggcattaaatatggctattcctggtgggcccaaattt
gagcctttggttagagacattaacttgcaggatgaagactggaatgaattcaatgacatc
aataagatcattattcgccagccaattcgcacagagtataagattgcattcccctatctg
tacaacaatcttcctcatcatgtgcatttgacatggtaccacactccgaatgtggttttc
attaaaacagaggatcctgaccttccagcattttactttgatcccctgataaaccctatc
tcacacaggcactctgtaaagagccaagagcctttaccagatgatgatgaagagtttgag
ctgccagaatatgtcgagccattcctcaaagaaacacctctatattctgacaatacagcc
aatggcattgctttactttgggctcctcgtcctttcaatctcaggtctggtagaaccagg
cgggctgttgacataccgcttgtaaagaattggtatcgtgagcactgtcctgcaggtcag
ccagttaaagttagggtgtcttaccaaaaactcctgaaatattatgttctcaacgctctc
aaacacaggccacccaaagcacagaagaagagatatctcttccgttcattcaaagccaca
aagttcttccagtcaacaaaactagactgggtggaagttggtctgcaggtctgccgacag
ggctacaacatgttaaaccttttgatacacagaaagaaccttaattatcttcatttggac
tacaatttcaatctgaaacctgtgaaaacactcaccacaaaagaacgtaagaagtctcgg
tttggcaatgcgttccacttgtgccgagaagttctgcgtctgaccaaactggttgtggac
agccatgtgcagtacaggttgggaaatgtagacgctttccagctctcagatggtttacag
tacatctttgcccatgttggacaactgactggaatgtacagatacaagtataaactcatg
agacaaatccgaatgtgcaaagacttgaagcatctcatctactacaggttcaatacaggc
cctgttggtaaaggacctggttgtggcttttgggcagcaggctggagagtctggctgttc
ttcatgcgtggtattaccccattgctggaaagatggcttggaaatctgctggccagacaa
tttgaaggtcgtcattccaaaggggtagcaaaaactgtgacaaaacaaagagtagagtct
cattttgatctggaactcagagcggctgtcatgcatgatatcctggacatgatgccagaa
ggcatcaaacacaacaaggctaggaccatcttgcagcacttgagtgaagcttggagatgc
tggaaagcaaacattccttggaaagttccaggtctgcctacacctattgagaatatgatt
ctgcgttatgtgaaggccaaagctgactggtggactaatactgcccattacaacagagag
cgcattcgccgtggggcaactgtggacaaaacagtttgcaaaaagaaccttggccgattg
acacggctttacctaaaagcagagcaagaaaggcagcacaactacctaaaggatggccca
tacatcactgcagaagaggctgtagctgtgtacaccaccacagtccactggctagagagc
aggcggttttctcctattccattcccccctctctcatacaagcatgataccaaactactc
atcctggccctggagagactgaaggaggcatacagtgtgaagtcccgtctaaatcaatcc
cagagagaagagttgggcttaattgaacaggcctatgacaatcctcatgaagcattgtcc
aggatcaagcgtcacttactcactcaaagagcattcaaagaggtggggattgaatttatg
gatctttatagccacttggttcctgtttatgatgtggagcctcttgagaagatcacggat
gcttacctggatcagtatctctggtatgaagctgacaaaagacggctcttccctccttgg
atcaaacctgcagacacagaaccacctccattgctggtgtacaaatggtgccaaggtatc
aacaacctgcaggatgtgtgggacaccactgaaggagaatgcaatgtgatgttggagtca
cggtttgaaaagatgtatgaaaagattgacttgacattgctgaatcgtttgctgcgtctc
attgtggatcacaatattgctgattacatgacggcaaaaaataacgtggtgatcaactac
aaagacatgaatcacacaaactcatatggcataattcgtggcttgcaatttgcgtctttc
attgtgcaatactatgggttggtgatggacctgttagttctgggtttgcacagagccagt
gagatggctggtccacctcagatgccaaatgacttccttagcttccaagatgtggctaca
gaaagtgctcatcctatccgcttgtactgcagatacattgatcgtattcatatatttttc
cgattttctgccgatgaggccagagatctcattcagagataccttacagagcatcctgat
cccaacaacgagaacattgttggctacaataataagaaatgctggccaagagatgcaagg
atgcggctcatgaagcatgatgtcaatcttggtcgtgctgtgttctgggacattaaaaac
cgcctacctcgttctgtcacaactgtacaatgggaaaacagctttgtgtctgtgtacagc
aaagacaatcccaatctgttgttcaatatgtgtggctttgaatgccgaattctccccaag
tgtcgtacaagctatgaggaattcactcataaagatggtgtctggaatctgcagaatgag
gtgaccaaagaacgaactgcccagtgtttcttgcgggtggatgatgaatctatgcagaga
ttccataacagagttcgtcaaattctcatggcctcaggttcaaccacatttaccaagatt
gtgaacaagtggaacactgcactgattggtctcatgacttatttccgtgaggctgtggta
aatacccaggagttgcttgatctgctggtgaaatgtgagaacaaaattcaaaccagaatt
aagattggtctgaactccaaaatgccaagtcgtttcccacctgtggtcttctacacaccc
aaagagctcggtggtttagggatgttgtctatggggcatgtgcttatcccacaatctgac
ctcaggtggtcaaaacagactgatgttggaatcacccatttccgctctggtatgagtcat
gaagaggaccagctgattcccaacttgtatcgctacatccagccatgggagagtgagttt
attgattcccaaagagtttgggctgaatatgctctgaagagacaggaagctattgctcag
aacagacgacttaccctggaagacttggaggattcatgggatagaggtatcccacgtatc
aacacgctcttccagaaagacagacacactttggcttatgacaagggctggagagtccgt
acagatttcaaacaataccaggtattgaaacaaaaccccttctggtggacacatcaaaga
catgatggaaaactttggaatctgaacaactaccgtacagacatgatccaggcccttgga
ggagtggaaggcatcctggagcatacattattcaaaggcacttacttccctacatgggag
ggtctcttctgggaaaaagctagtggttttgaagagtccatgaagtggaagaaactgacc
aatgctcagcggtctggtctgaatcagatccccaacagaagatttactctttggtggtcg
cccacaatcaacagagccaatgtatatgttggattccaggtgcaattggatttgactggc
attttcatgcatggcaagattccaacactaaagatctcactgattcagatattcagagcc
cacttgtggcagaagatccatgaaagcattgtcatggatctgtgtcaggtgtttgatcag
gagcttgatgctctggaaattgaaactgtccagaaagaaacaatccaccctaggaagtct
tataagatgaactcatcttgtgcagacattttgctctttgcttcctacaagtggaatgtg
tcccgaccatctctgcttgctgattcaaaggatgtcatggacagcaccacaacacagaag
tactggattgatatacagttgaggtggggggactatgattctcatgatatcgagcgatat
gcgagagcaaagttcttggactacactactgataacatgagtatttacccatcacccact
ggtgtcctgattgccatagacctggcctataacctccatagtgcttatggaaactggttc
cctggagggaagcctttgatacagcaagcaatggccaagattatgaaagccaaccctgcc
ttatatgtgctgcgtgaacgcatccgtaagggattgcagttgtattcttctgagccgact
gagccatacttgtcttcccagaactatggtgaactcttctccaatcagatcatctggttt
gtggatgatactaatgtgtacagagtaaccattcataagacctttgaaggcaacttgaca
acaaaaccgatcaatggagcaattttcatatttaacccaaggacagggcagcttttccta
aaaattatccacacatcggtatgggcaggacaaaagcgattgggtcagttggccaaatgg
aaaactgcagaagaagttgctgctttgattcgttccttgcctgtagaggagcagcctaaa
cagattattgttaccagaaagggcatgttggatcctcttgaggtacatttattggacttc
cctaacattgtcatcaaaggatctgagctgcagttgcctttccaggcttgtctgaaagtg
gagaaatttggagacctgattttgaaggccacagagccacaaatggttcttttcaatctc
tatgatgattggctgaagactatctcatcatacacggcattctctcgattgattctgatt
ctcagagccctgcatgtgaataatgaccgtgcaaaggtgatcctaaagccagacaagact
accattactgagcctcaccatatctggcccacactaaccgatgaggaatggattaaggtg
gaggttcaactaaaggatctgatcttggcagactatggcaagaaaaacaatgtcaatgtg
gcatctttaacacagtctgaaatcagagatatcatattgggtatggaaatatctgcccca
tcacaacagaggcaacagattgcagagattgagaagcagacgaaagaacaatctcagctc
accgcaactcagactcgtacagtcaacaagcatggagatgaaatcatcacctccactacc
agcaactacgagacccagacattttcttctaagacagagtggcgtgtcagagcaatatct
gctgcgaacctccacctccgaaccaaccacatctatgtgtcatctgatgatatcaaggag
actggttacacttacatcttgcccaagaatgtgttgaagaaattcatctgcatttctgac
ctgcgagctcagattgctggctatctctatggggtgagcccacctgataacccccaagtg
aaggaaatccgctgcattgtcatggtgccacagtggggaactcaccagactgttcatttg
ccgagtcagctgcctcaacatgagtatcttaaggaaatggagccgttaggatgggttcac
acacagccaaatgagtctcctcagctgtcaccacaagatgtcaccactcatgctaaagtc
atggcagacaatccagcctgggatggagagaaaactataattataacatgcagcttcact
cctggatcctgcactctaacagcttacaaacttacacccagtgggtatgagtgggggagg
cagaatactgataaagggaacaaccccaaaggctatctaccttctcactatgaaagagtg
cagatgcttctgtctgatcgtttccttggtttcttcatggtaccagcacaggcatcctgg
aactacaacttcatgggtgtgagacacgatcccaacatgaagtatgaactacagcttgct
aaccccaaggaattttaccatgaagttcatcgcccctcgcacttcttgaatttcgccttg
ttgcaggaaggggaggtatactctgctgaccgtgaagacctgtacgcatag
DBGET
integrated database retrieval system
