Hyla sarda (Sardinian treefrog): 130357482
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Entry
130357482 CDS
T11475
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03030
DNA replication
hsq03420
Nucleotide excision repair
hsq03430
Mismatch repair
hsq03440
Homologous recombination
hsq03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130357482 (RPA1)
03420 Nucleotide excision repair
130357482 (RPA1)
03430 Mismatch repair
130357482 (RPA1)
03440 Homologous recombination
130357482 (RPA1)
03460 Fanconi anemia pathway
130357482 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsq03000
]
130357482 (RPA1)
03032 DNA replication proteins [BR:
hsq03032
]
130357482 (RPA1)
03400 DNA repair and recombination proteins [BR:
hsq03400
]
130357482 (RPA1)
Transcription factors [BR:
hsq03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130357482 (RPA1)
DNA replication proteins [BR:
hsq03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130357482 (RPA1)
DNA repair and recombination proteins [BR:
hsq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130357482 (RPA1)
MMR (mismatch excision repair)
130357482 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
130357482 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
130357482
NCBI-ProteinID:
XP_056416155
LinkDB
All DBs
Position
2:394835912..394909846
Genome browser
AA seq
589 aa
AA seq
DB search
MALPKLSEGSIAAILQGDTSSKPILQVINTRPINTANGPPRYRLLMSDGLNTLSSFMLAT
QLNSLVDDNLLAAHCICQVSRYIVNNLKDGRRVIIIMEMDVLKPADSVYGKIGNPQPYND
GQGAPQPAAAAPTPPPQSKPAQSSAPPSSMNKGLSKPFGGGGPYTPGGSQSKVVPIASLN
PYQSNMNINVARITSHYPISTVGEIRATAFNDQADKFFSLIEVNKVYYFSKGTLKIANKQ
YTAVKNDYEMTFNSETTVIPCDDSSDVPSVQFEFVPISEFENKNKDTLLDVIGVCKSFED
VTKVTIKSNNREVSKRTIHLMDTSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGG
RSLSVLSSSTLMINPDIPEAFKLRGWFDSEGQVLEGSSISESRGGAGGGNTNWKSLLEVK
TENLGHGEKADYFTSVATIVYLRKENCMYQACPSQECNKKVIDQQNGLFRCEKCDKEFPN
FKYRLILSANIADFGENQWITCFQESAESILGQNAAYLGELKEKNEQAYEEVFQNANFRS
YTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRKLASQGV
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaccgaagctaagcgagggctccatagcggccatcctacagggtgatacctca
tccaagcctatcctgcaggtcattaataccagacccatcaacactgccaatggtcctccc
cgatatcggctgctgatgagcgatggactaaacaccctttcctcttttatgttggcaaca
cagctgaactctctagtggatgacaatctccttgcagcgcactgtatctgtcaggtctcg
cggtacattgtcaacaacttgaaagatggaagacgagtgattataataatggaaatggat
gtattgaagccagctgattctgtctatgggaagattggaaatcctcaaccttataatgat
ggtcaaggagcaccacaacctgcagcggctgccccgactcctccaccacaaagcaagcct
gcccaaagctctgctccaccttcatctatgaacaaagggctgtctaaaccatttggaggg
ggtggaccatatacacctggaggctctcagtctaaagtggtaccaattgccagccttaac
ccataccaatcaaacatgaacattaatgtagcacgcattacctcacattatcccatttcc
actgtgggcgagatccgggctactgccttcaatgatcaagcggacaagtttttctctctt
attgaagtgaataaggtatattacttttcaaaaggtactttgaagattgctaacaagcag
tatacggctgtaaagaatgactatgagatgactttcaatagtgaaaccactgttatccct
tgcgatgactcttcagatgtcccttcagtgcagtttgaatttgttcccatttctgagttt
gaaaacaagaataaagacacactattagatgtcataggtgtttgcaagagttttgaagat
gtaactaaagtcacgataaaatcaaacaaccgtgaagtttcaaagagaacgatccattta
atggacacatcaggcaaagtggtttctacaactctgtggggtgaagatgcagataaattt
gatggttccagacaacctgttgtggcgatcaaaggcgcacggctttctgacttcgggggc
aggtccttgtcagttttatcatccagcacccttatgataaatccagatattcctgaagca
ttcaagctccgcggatggtttgactctgagggtcaagtgctcgaaggatcatctatttcg
gagtctcggggtggtgctggaggagggaacactaactggaagtctctgcttgaggttaag
acagaaaacctgggccacggagaaaaagcagattatttcacctctgtggcaactattgtc
tatcttcggaaagagaattgtatgtatcaggcctgcccttctcaagagtgtaacaagaag
gtgattgaccaacagaatggacttttccgctgtgagaagtgtgacaaagagtttcctaac
tttaaataccgccttattctatcagcaaatattgctgattttggagagaatcaatggatt
acatgttttcaggagtctgcagaatccattcttggccaaaatgctgcttatcttggggaa
ctcaaagaaaagaatgaacaagcttatgaggaggtgtttcagaatgcaaacttccgatct
tacacctttagaattcgggtcaagttggagacttacaacgatgaatcccgtatcaaagcc
acagccatggatgtgaaacctgttgatcacaaagaatactctagacgtcttatcatgaat
atccggaaactggcctctcaaggagtctga
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