Hyla sarda (Sardinian treefrog): 130357828
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Entry
130357828 CDS
T11475
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
hsq Hyla sarda (Sardinian treefrog)
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130357828 (SMG8)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130357828 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Nucleo_LEF-12
Motif
Other DBs
NCBI-GeneID:
130357828
NCBI-ProteinID:
XP_056416534
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All DBs
Position
2:complement(245535169..245553366)
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AA seq
918 aa
AA seq
DB search
MKMSGCGPSLLRELLSSEPTWKDDEVCVVGVFGKTALLQGGWDKGCLVNSLCDRHVFPLF
QQLPEQARERSVFQTYYEQESQVLYLVLTGISDTGQLVRACEELGRGVSHAEAHEWWKDE
EKLHCMHMLYLFSVCHLLLLLHPACCFDIAYEKLFRALDSVRQKLLPSLKPALKECPVGL
EWKLNARPCPPRLLFVFQLNGALRGVEPSRGAGQTAVEKPKKHSPKRRLQHALEDQIYRI
FRKSRVLTNQSINCLFTVPANQAFVYIVAEQDDDPVGMLLDGLRQNCMVRDVEPSIGSIS
GPRRYHMMRHSRQQLTFTAESTSWVSGQLVDCTLREFLFQHVELVLTKKGFDDSVGRNPQ
PSHFELPTYQKWANVALKLYEVIIENKDDDPPAFPGGYPPKLLANMKVLEGYLDADTKFS
ENRCQKALPMAHSAYQSNLPHNYTTTVHKNQLAQALRVYSQHARGPAFQKYAIHLNEDCY
KFWSSGHQLCEERSLTDQHCVHKFHLLPKPGEKIEPDRNPPILYHNSRARSTGNCNCGRK
QAPREDPFDIKSANYDFYQMLEEKCCGKLDHINFPVFEPSTPDPAPAKNEAPSTSQEGDV
EVEKLKDKEPQTQGESTSLSLALSLGQSSDSLGTYPADPQAGGDNVDAPGHSTEEKAEKR
PSLVDRQASTVEYLPGMMHSNCLKGLLPKFSSWSLVKLGPAKSYNFHTGLDQSGFIPGTN
YLMPWDIVIRTKPEDEGDLDTNSWPAPNKSVPGKRSGAVTGRGRRRDDIARAFVGFEYED
SRGRRFMCSGPDKMMKVLGNGPKESAVKALNTDMPLYMLSPSQGRGLKPHYAQLMRLFVV
VPDVPLQIVMTPQVQPGPPPCPVFYPEKQDIILPADGLWVLRFPFSYVMERGPCYPPKEN
QQLISYKVMRGILKAVPL
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtcgggctgcggcccttccctgctgcgggagctgttgagctctgagccgacg
tggaaggacgatgaggtgtgcgtggttggggtgttcgggaagacggctctgctccaaggc
ggctgggacaaaggctgcctggtgaactccctgtgtgaccggcatgtctttccgctgttc
cagcagctgccagagcaggcccgggagcggagcgtcttccagacatactacgagcaggag
tcccaagtgctgtacttggtgctgactggcatcagtgacacagggcagctggtgagggca
tgcgaggagctggggcgcggggtgtcccatgctgaggcccacgagtggtggaaggacgag
gagaagctgcactgtatgcacatgctctacctcttctctgtgtgccacctcctgctgctc
ctgcaccctgcctgctgctttgacattgcctatgagaagctgttccgggcactggacagt
gtgcgtcagaagcttctgccctccctgaagccagcactgaaggagtgccccgtgggacta
gagtggaagcttaatgcccggccttgtccaccacggctgctgtttgttttccagctgaat
ggagctctacgaggagtggagcccagccgtggtgcgggacagacagctgtagagaagccc
aagaagcattcacccaagagaaggctgcagcatgcactggaggaccagatctaccgaatc
ttccgcaagagccgggttcttaccaaccaaagcatcaactgcttgtttactgtgcccgcc
aaccaggcctttgtgtatattgtggctgagcaggatgatgacccggtgggtatgttgctg
gatggcctgcggcagaactgcatggttagagatgtggagcccagtattggaagtatctcg
gggccccggcgctaccatatgatgaggcacagccgacagcagctgacctttacagcagag
agcacctcttgggtctctgggcagctggtggactgcaccctgcgtgagtttctcttccag
catgtggagctggtgctcacaaagaagggctttgatgatagcgttggcaggaacccacag
ccctcccactttgaactgcccacctatcagaaatgggccaatgtggccctgaagctttat
gaggtgatcatagagaataaggacgacgaccctccagccttcccagggggctatccccca
aagctgctggctaacatgaaggtactggaaggctatttggatgcagatactaagttttca
gaaaaccggtgtcagaaagctctaccaatggcacatagtgcctaccaatccaacctgccc
cataactacaccaccacagttcataaaaaccagctggcacaagcactaagggtgtacagc
cagcatgctcgagggccagcattccagaaatatgccatacaccttaatgaagattgctac
aaattctggagcagcggccaccagctttgtgaggaaaggagtctaacagatcagcactgt
gtacacaaatttcacttgcttccaaaaccaggtgaaaaaattgagccagatagaaatcct
cccatcctgtaccataacagccgtgcaaggtctacaggaaactgtaactgtggaagaaag
caggcacctcgtgaggacccgtttgacatcaagagtgcgaattatgatttctaccagatg
cttgaagagaaatgctgtggaaaacttgatcacataaattttccagtatttgagccaagc
acacccgaccctgctcctgccaagaatgaggcaccttctacttctcaagaaggggatgtg
gaagtagagaagttgaaggataaggaacctcaaacacagggtgaaagtactagtctaagc
cttgcacttagtctgggccagtcttcagatagtcttggaacatacccagctgacccccaa
gcaggaggagataatgttgatgctcctggacatagtacagaggagaaggctgaaaaaagg
cccagtttagtggatcgacaagcatccactgtcgaatacctccctggtatgatgcattca
aactgtcttaagggccttcttcctaaattttcaagctggtcactagtaaaacttggccct
gccaaatcttacaactttcacacaggattagatcaatctggatttatcccagggaccaac
tatctgatgccatgggacattgttatccgaacaaaaccagaagatgaaggggacctagac
accaattcttggcccgctcctaataagtctgtacctggtaaaagaagtggagccgtaaca
ggaagaggtcgtagaagggatgatattgcaagagcatttgttggttttgagtatgaggat
tcacgagggcgcagatttatgtgctcgggaccagataaaatgatgaaagttcttggcaat
ggacctaaggaatcggcagttaaagccctcaacactgacatgcctctgtacatgttgtca
ccatctcaagggcgaggacttaaaccgcattatgcacagcttatgagactgtttgttgtg
gttcctgatgttcctttacaaattgtaatgacccctcaggtgcagccaggaccacctcca
tgccctgtattttatcctgaaaagcaggatattattctgcccgctgacggattatgggtt
ttaagattccccttctcctatgtaatggaacgaggaccttgttaccccccaaaagaaaat
cagcaactgatcagctacaaagtaatgagagggatattaaaggcggtccctctatag
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