KEGG   Hyla sarda (Sardinian treefrog): 130361021
Entry
130361021         CDS       T11475                                 
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
hsq  Hyla sarda (Sardinian treefrog)
Pathway
hsq04510  Focal adhesion
hsq04512  ECM-receptor interaction
hsq04518  Integrin signaling
hsq04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hsq00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130361021 (COL9A1)
   04518 Integrin signaling
    130361021 (COL9A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130361021 (COL9A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130361021 (COL9A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:hsq00535]
    130361021 (COL9A1)
Proteoglycans [BR:hsq00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   130361021 (COL9A1)
SSDB
Motif
Pfam: Collagen Laminin_G_3
Other DBs
NCBI-GeneID: 130361021
NCBI-ProteinID: XP_056419555
LinkDB
Position
3:complement(199497686..199685169)
AA seq 925 aa
MKGIWNFPFALYSISFMGSLVYGTIEHYTRFPFSLKFNNVQHKCPPINGGQDDLPGFDLI
SKFQIDRAASVGAIQTVVGTSPFQVAYQLGTNVDFRILTRHIYGSGLPEEYSFMFTFRMK
DSTKNKYWSIWQIVDSEGKQQAAINFNGPKKALEFSYKGADGKLNTLTFARLPFLFDTNF
HKVLFSVQKDKITLYIDCIKVDSFKLVPRGKVSLDGYTIIGKLKSNNEVSVPFDLQWMLI
HCDPLRPERESCTELEAIRGITQVLIQRGPPGPPGPVGPPGPSGVPGIDGIDGDRGPDGP
PGPPGPDGDSGKPGSPGLPGEPGADGLTGPEGIPGPSGPRGQKGEPGLPGSRGLSGGGVS
GPRGVPGPPGLPGELGRGGSVGDAGGRGLPGPPGPPGPPGTVALPEGDPLCPNSCPPGRP
GYPGLAGMKGHKGVKGEAGEPGKQGHKGEEGEQGGLGDIGAQGPPGPQGLRGITGIMGPK
GNKGARGGDGEPGPQGVAGAAGDQGQRGSIGEAGPKGDRGTVGPRGITGMPGSKGESGLP
GVDGRDGIPGMPGTKGDSGEPGAPGEAGLQGLPGLPGNPGAKGVSGEKGNSGSPGVAGLM
GKSGKPGDQGPQGEVGPIGPVGPTGDRGETGPEGPPGQPGKQGPRGDPGFLGLPGPPGLP
GLKGDRGGVGETGPKGEQGGAGEEGIGGDKGDQGDNGNLGAKGSTGSPGEPGNRGPEGGR
GLPGVEGPQGSLGPRGMQGEQGAPGLPGSQGPAGREPTDQHIKQVCMRVLQEQLANLAAS
LRRPESGAVGLPGRPGPPGPPGSPGDNGVPGHVGARGLPGLKGPSGEIGLKGPKGDSGER
GERGLPGRGPKGLPGIQGLIGEPGKPSYGREGRDGERGPPGAPGQPGIPGPPGPPGQAGF
CDPSSCSLQAIAAPQSAKDENMKGP
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgaagggcatctggaattttccattcgccttgtactcaataagcttcatgggaagtctg
gtatatggcacaattgaacactatacaagatttccattcagcttaaaattcaacaatgtc
cagcacaaatgtccacccatcaatggtggacaggatgacctaccaggctttgatctgatt
tccaagtttcagattgacagagctgcctctgtcggagctatacagactgtcgtggggaca
tcaccattccaagtggcctatcagttgggaacaaatgttgacttcaggattctgaccagg
cacatctatggcagtgggctaccagaggaatattccttcatgtttactttccggatgaag
gacagcaccaaaaacaaatactggagtatctggcaaattgtagactcggagggaaagcag
caagcagctatcaattttaatggtcctaagaaagcccttgagttctcttacaagggagca
gatgggaaattgaacactctcacgtttgcccgtctccccttcctgtttgatactaatttc
cataaagttctttttagtgtgcaaaaggataaaatcacactttatattgattgcatcaaa
gtggattcattcaagctggttccaagaggcaaagttagtctggatggctacactatcata
ggaaagctgaaaagtaacaatgaagtatctgtgccgtttgacctccaatggatgttaatt
cattgtgatcctctaaggcctgagagagagtcctgcacagagctggaagccataagaggg
atcacccaagtattgatacagagaggaccgccgggaccccctggaccagtaggtccccct
ggaccatcaggagttcctggcatagatggcattgatggagaccggggtccagatggtcct
ccaggccctccgggtccagatggggattcaggcaaaccaggatctcccgggttaccaggc
gagccaggagccgatggactgactggacctgagggaatccctgggccttctggaccaaga
ggtcaaaagggtgagcctggactgccaggttctcgtggtttgtcgggtggaggagtttca
gggccacgaggagtacctggtccccctggacttccaggagagttaggtcggggcggttct
gtgggtgatgctggtggaagaggacttccaggacctccagggccacccggaccaccaggg
acagttgctctgccggaaggagatcccctgtgccctaattcatgcccaccaggccgtccg
ggatatccaggtttggctggaatgaagggccacaaaggtgtgaaaggtgaagccggggaa
cctggaaaacaaggtcataagggagaagaaggtgaacaaggagggcttggtgacattggt
gcccaaggacctccgggaccacaaggtttaagaggaataactggcattatgggaccaaaa
ggtaacaagggtgctcgtgggggagatggagagcctggtcctcaaggggttgctggtgct
gctggtgaccaaggtcaaagaggttcaataggagaagctggaccaaaaggtgatagagga
actgttggaccaagaggtatcactggaatgccaggttctaagggtgaatcgggattgcct
ggtgtcgatggccgtgatggaatccctggaatgccaggaacaaagggtgactctggagaa
cctggagccccaggagaagcaggtcttcaaggattgccaggtttgccaggcaatccagga
gcaaaaggagtatctggagagaagggaaactctggttctccaggtgtagctggattaatg
ggaaaatctggtaaacctggtgatcaaggacctcaaggggaagttgggccaataggacct
gttggacctacaggtgacaggggagagacaggtcctgaaggcccacctggacaaccagga
aaacaaggtccacgaggtgatcctggctttttaggtctgcctggccctcctggccttcca
ggacttaaaggtgacaggggtggtgtcggagagactggacctaagggagagcagggtgga
gcgggagaagaaggaattggtggagataaaggtgaccagggtgacaatggaaatctaggc
gcaaagggatcaactggaagtcctggagagcctggtaatcgtgggccagaaggcggtcgt
ggtctaccaggtgtagaaggtcctcaaggttccttgggtcctcgtggtatgcaaggcgaa
caaggtgcacctgggttaccaggaagccagggccccgcaggtagagaaccaacagatcag
catatcaaacaagtctgtatgagagttttgcaagaacagttagcaaacttggcagctagt
ttacgaaggccggaatctggagcagttggtttaccaggacgaccaggcccaccaggacca
cctggttcaccaggagataatggtgttcctggacatgttggtgcaagaggtcttcctggg
ctaaaaggtccttcaggagaaattggtcttaagggtccaaaaggtgattctggtgaaaga
ggagagagaggattaccaggaagaggtccaaaaggcttgccgggaatacaaggacttata
ggtgaaccaggaaagccaagctatggacgagaaggccgtgatggagagagaggtccccct
ggtgctcctggacaacctggaattccaggacccccaggtcctcctggccaagctggattc
tgtgatccttcctcttgcagcctccaggccattgctgctccccagtctgctaaagatgaa
aacatgaaagggccttga

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