KEGG   Hyla sarda (Sardinian treefrog): 130367060
Entry
130367060         CDS       T11475                                 
Symbol
THOC3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
hsq  Hyla sarda (Sardinian treefrog)
Pathway
hsq03013  Nucleocytoplasmic transport
hsq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130367060 (THOC3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    130367060 (THOC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsq03019]
    130367060 (THOC3)
   03041 Spliceosome [BR:hsq03041]
    130367060 (THOC3)
Messenger RNA biogenesis [BR:hsq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130367060 (THOC3)
Spliceosome [BR:hsq03041]
 Complex C
  Other components
   EJC/TREX
    130367060 (THOC3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130367060 (THOC3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_TEP1_C eIF2A WD40_RFWD3 RMC1_N Beta-prop_HPS5 NBCH_WD40 WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th TRM82_WD ASA1 PAC11 Beta-prop_WDR75_1st Beta-prop_EIPR1 B-prop_COPA_B_2nd PD40 Beta-prop_ACSF4 Peptidase_S9_N Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR41 Cytochrom_D1 WD_LRWD1 CNH Beta-prop_SCAP Beta-prop_ELP1_1st Beta-prop_Nup120_160 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 130367060
NCBI-ProteinID: XP_056425416
LinkDB
Position
4:complement(325464383..325475733)
AA seq 319 aa
MSALALQEHFRANNKTREFPAHNAKAHSVAWSCDGRRLASGSFDKTASVFLLEKDRLIKE
TNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRSERCLTTVTTKGENINICWSPD
GQTIAVGNKDDVVTFIDVKTHRPRAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYP
ELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDIEELVCVRCFSRLDWPVRTL
SFSYDGKMLASASEDHFIDIAHVETGEKLCEVQCESPTFTVAWHPKRYLLAFACDDKDGK
YDSSREAGTVKLFGLPNDS
NT seq 960 nt   +upstreamnt  +downstreamnt
atgtcggcgctggcgctgcaggaacacttccgtgcgaacaacaagacccgggagttcccc
gcgcacaacgctaaggcgcactcggtagcgtggagctgtgacgggcggcgcctggcctcc
ggctccttcgataagacggccagtgtgttcttgctggagaaagaccggctgataaaagag
acaaactatcggggtcatggcgatagcgttgatcaactttgctggcatcccacaaaccca
gatctctttgtcactgcatcaggggacaagactattcgaatatgggatgttaggtctgag
aggtgccttacaactgttaccacaaagggtgaaaatataaatatctgctggagcccagat
gggcaaaccattgcggtaggaaataaggacgatgttgtcaccttcatagatgtcaaaacc
catcgccccagagcagaggagcagttcaagtttgaagtcaatgaaatctcctggaacaat
gataacaatatgttctttcttaccaatgggaatggctgcataaacattctgagttatcca
gaactcaagcctattcagtccattaatgcccacccttctaattgtatttgcataaaattt
gaccctactggaaagtattttgccactggcagtgcagatgcacttgtcagtctttgggac
atagaagaactggtatgtgtgcgttgtttttccaggttagactggcccgtgagaacacta
agcttcagttatgatggaaaaatgctggcatcagcatctgaagaccatttcattgatatt
gcacatgttgaaacaggtgagaagctgtgtgaagttcagtgtgaatcgcctactttcact
gtagcctggcatccaaagcggtatcttttggcgtttgcctgtgatgacaaggatggcaaa
tatgatagtagtcgtgaagctggcactgtaaaattatttggtcttccaaatgattcttga

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