Hyla sarda (Sardinian treefrog): 130367060
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Entry
130367060 CDS
T11475
Symbol
THOC3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03013
Nucleocytoplasmic transport
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130367060 (THOC3)
09122 Translation
03013 Nucleocytoplasmic transport
130367060 (THOC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130367060 (THOC3)
03041 Spliceosome [BR:
hsq03041
]
130367060 (THOC3)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130367060 (THOC3)
Spliceosome [BR:
hsq03041
]
Complex C
Other components
EJC/TREX
130367060 (THOC3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130367060 (THOC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_NOL10_N
Beta-prop_TEP1_C
eIF2A
WD40_RFWD3
RMC1_N
Beta-prop_HPS5
NBCH_WD40
WD40_MABP1-WDR62_1st
Tricorn_2nd
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
TRM82_WD
ASA1
PAC11
Beta-prop_WDR75_1st
Beta-prop_EIPR1
B-prop_COPA_B_2nd
PD40
Beta-prop_ACSF4
Peptidase_S9_N
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_WDR41
Cytochrom_D1
WD_LRWD1
CNH
Beta-prop_SCAP
Beta-prop_ELP1_1st
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
130367060
NCBI-ProteinID:
XP_056425416
LinkDB
All DBs
Position
4:complement(325464383..325475733)
Genome browser
AA seq
319 aa
AA seq
DB search
MSALALQEHFRANNKTREFPAHNAKAHSVAWSCDGRRLASGSFDKTASVFLLEKDRLIKE
TNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRSERCLTTVTTKGENINICWSPD
GQTIAVGNKDDVVTFIDVKTHRPRAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYP
ELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDIEELVCVRCFSRLDWPVRTL
SFSYDGKMLASASEDHFIDIAHVETGEKLCEVQCESPTFTVAWHPKRYLLAFACDDKDGK
YDSSREAGTVKLFGLPNDS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgctggcgctgcaggaacacttccgtgcgaacaacaagacccgggagttcccc
gcgcacaacgctaaggcgcactcggtagcgtggagctgtgacgggcggcgcctggcctcc
ggctccttcgataagacggccagtgtgttcttgctggagaaagaccggctgataaaagag
acaaactatcggggtcatggcgatagcgttgatcaactttgctggcatcccacaaaccca
gatctctttgtcactgcatcaggggacaagactattcgaatatgggatgttaggtctgag
aggtgccttacaactgttaccacaaagggtgaaaatataaatatctgctggagcccagat
gggcaaaccattgcggtaggaaataaggacgatgttgtcaccttcatagatgtcaaaacc
catcgccccagagcagaggagcagttcaagtttgaagtcaatgaaatctcctggaacaat
gataacaatatgttctttcttaccaatgggaatggctgcataaacattctgagttatcca
gaactcaagcctattcagtccattaatgcccacccttctaattgtatttgcataaaattt
gaccctactggaaagtattttgccactggcagtgcagatgcacttgtcagtctttgggac
atagaagaactggtatgtgtgcgttgtttttccaggttagactggcccgtgagaacacta
agcttcagttatgatggaaaaatgctggcatcagcatctgaagaccatttcattgatatt
gcacatgttgaaacaggtgagaagctgtgtgaagttcagtgtgaatcgcctactttcact
gtagcctggcatccaaagcggtatcttttggcgtttgcctgtgatgacaaggatggcaaa
tatgatagtagtcgtgaagctggcactgtaaaattatttggtcttccaaatgattcttga
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