Hyla sarda (Sardinian treefrog): 130367893
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Entry
130367893 CDS
T11475
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130367893 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130367893 (XAB2)
03041 Spliceosome [BR:
hsq03041
]
130367893 (XAB2)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130367893 (XAB2)
Spliceosome [BR:
hsq03041
]
Complex B
Other components
Prp19-related factors
130367893 (XAB2)
Complex C
130367893 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_MalT
ANAPC3
CCDC84
TPR_1
Tcf25
NRDE-2
Motif
Other DBs
NCBI-GeneID:
130367893
NCBI-ProteinID:
XP_056426844
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All DBs
Position
4:complement(50534940..50561174)
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AA seq
838 aa
AA seq
DB search
MPDKEIAFEEDDLQFEEEILRNPYSVKCWMRYIESKSSASAHTLNLIYERALKELPGSYK
LWYAYLKQRRKQVKRKCITNPAFEEVNNCHERALVFMHKMPRIWLDYCQFLVDQCRITRS
RRTFDRALRALPITQHHRIWPLYLRFVRAHPLPETAVRVYRRYLKLSPENAEEYIEYLRS
VDRLDEAASRLAAIVNQDDFVSKEGKSNYQLWQELCTLLCQNPSSIRSLDSAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESIIAA
KMETASELGKEEEGDLDLELRLARFEQLMERRPLLLNGVLLRQNPHNVHEWHKRVQLYQG
KPREIINTYTEAVQTVVPAKATGKPHSLWVAFAKFYEDNGQIEDARAILKRATQVQYTHV
DDLASVWCQFGEMELRHENYEEALTILRKATAVPARKAEYFDASEPVQNRLYKSLKVWSM
LADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQALDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVEPAEQYEMFNIYIKRAAEIYGVTHTRSIYERAIEILPDDQAREMCL
RFADMECKLGEIDRARAVYSYCSQMCDPRLTSGFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQRLRAEGVGASEDSKEAVDDMQALEQRAAVVAAEAAKDKPQMKEKI
LFVRSDASRTELAELALQNNPDEINIGDEDSEEDMEPDEVQLEQKSVPSSVFSGLADD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccggataaagaaatcgcctttgaagaagatgacctgcagtttgaggaggagatcctg
cggaatccctattctgtcaagtgctggatgcgatatatagaatccaagtcatccgcatcg
gctcataccctaaacttaatctatgagcgagcactcaaggagctgccgggaagctacaag
ttgtggtatgcctatctaaagcagcggaggaagcaggtgaagaggaaatgcatcactaat
ccggctttcgaggaggtgaataattgccatgagcgagctctggtcttcatgcacaagatg
ccccgcatttggctggattattgccagttcctcgtggaccagtgtagaatcacccgcagt
aggcgaacatttgaccgggcacttcgtgctcttcccatcacccagcaccatcgcatctgg
cccctttacttacgctttgtccgtgcacaccccctgccagagactgccgtcagggtttac
aggaggtacttaaagctatcgcctgagaacgcggaggagtacatagagtatctacgttct
gtcgatagattggatgaagcggcttccagattggcagccattgtaaaccaagacgacttt
gtatcaaaggaaggaaagtcgaattatcagctatggcaagagctgtgtacacttctgtgc
cagaaccccagttccatccgctcccttgactcggcagccatcatccgaggcggcttgacg
cgctttacagaccaaaggggcaagttgtggtgtgcgctcgctgaatatcatacacgcagt
ggccattttgaaaaggctcgagatgtctacgaggaggccatccagaccgtcaccactgta
cgagacttcactcaagtgttcgacagctacgctcagtttgaagaaagtatcattgctgcc
aaaatggaaacagccagtgagctggggaaagaagaggagggtgacctagatctggagctg
agattggctcgctttgagcagctgatggagaggagaccccttttactcaatggggtgtta
ctgcgacagaacccacacaatgtccatgagtggcacaaaagggtgcagctgtatcaaggc
aagccgcgagagattattaacacatatacagaggctgtgcagactgtggttcctgcaaag
gctactgggaaaccgcactccttgtgggtggcgtttgccaagttctatgaagacaatgga
cagatagaggatgctcgggcgattctgaagagggcgacccaggtgcagtacacacatgtg
gatgacttggcctcggtttggtgccagtttggtgagatggagctgagacatgagaattac
gaggaggcgctgactatattgaggaaagccacggcggtacctgcccgcaaggctgaatac
tttgatgcctcagagccagtacagaaccgactgtacaagtccctaaaagtctggtctatg
ctggccgacctggaagagagtctgggaaccttcaagtccacgaaggccgtgtacgatcgc
attatcgacctccgcatcgccaccccacagataatcatcaattacgccctcttcttggaa
gaacacaactactttgaagaaagtttcaaggcctacgagcgcggcatcgccctgttccgg
tggcccaacgtgtatgacatctggagcacttacctgtctaagttcatcgctcggtatggc
ggtaagaagctggagagagcccgggacctctttgaacaagccctggatggttgtcctcga
aagtttgcaaaaaatatatttctactgtatgcaaaactggaggaagagcacggtctggcc
cggcatgccatggctttgtatgagcgagcaacacaggcggtggaaccggcagagcagtac
gagatgttcaacatatacatcaagagggcggctgagatttatggcgtcacgcacacccgc
agcatttatgagcgagccattgagattttgccagacgaccaggcccgggagatgtgtcta
cgctttgccgatatggagtgtaaactaggagagattgaccgcgcccgagctgtgtattcc
tactgctctcaaatgtgtgatccccggttgacatcagggttttggcagacctggagagac
tttgaggtacggcacggcaacgaggacacgctgcgcgagatgctgcgggtcaagcgaagt
gtacaagccaagtacaacacgcaggggaccttcctcgtgtctcagaggctgagggccgaa
ggagtaggcgccagtgaggacagcaaagaagcagtggatgacatgcaggctctggagcag
agagcagccgtggtggccgcagaggcagcgaaggataaacctcagatgaaggagaagatc
ctatttgtcaggtccgacgcctcccgtacagaactagcagaactggcgcttcagaataat
ccagacgagatcaacataggagatgaggattcagaagaggacatggagcccgatgaagtg
cagctggagcagaaatcggttccttcttcggtattctctggtctcgccgatgactga
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