Hyla sarda (Sardinian treefrog): 130368842
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Entry
130368842 CDS
T11475
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03013
Nucleocytoplasmic transport
hsq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130368842 (UPF1)
03015 mRNA surveillance pathway
130368842 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130368842 (UPF1)
Enzymes [BR:
hsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130368842 (UPF1)
5.6.2.5 RNA 5'-3' helicase
130368842 (UPF1)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130368842 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
130368842 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130368842
NCBI-ProteinID:
XP_056429127
LinkDB
All DBs
Position
1:279857929..279966696
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AA seq
1108 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQGQTQSQLGGQVNGPD
GILQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGARFMTTAMYDAREAIIPGSVYDRSSQARPSNMYFQTHDQIGMISSGPSHVTAMNI
PIPFNLVMPPMPPPSYFGQANGPTAAHSYIDRVSQGRGMPKGKATRGGRQKQRGIGLQGM
SQGNMPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQ
IDVALSQDSTYQGERAYQLGGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagactctcaccttcctggacacggaggag
gccgagcttctcggggccgacactcagggctcggagttcgagttcaccgactttactttg
cccagtcagactcaggggcaaacccaaagccagctgggcgggcaggtaaatggccctgac
ggtattcttcagaatggcacagtggatgatggtgtggggaaaacaagtcaattgctgggt
gagctgaattttgaagaagatgaagaagatacgtattacacaaaggatcttccagtgcat
gcctgcagctattgtggaattcatgatccagcttgtgtagtctactgtaacactagtaaa
aaatggttctgcaatggacgtggcaacacctctggcagccacattgtgaatcatctggta
agagcaaagtgtaaagaggttactctgcacaaggatggaccacttggtgagactgtattg
gagtgctacaattgtggatgccggaatgtgtttcttctgggattcattccagccaaggca
gattctgttgttgttctactgtgccggcaaccttgcgcaagtcagagcagtttgaaggac
attaactgggacagttcccagtggcaacctcttattcaggaccgttgcttcttgtcctgg
ttggtgaagatcccatctgaacaagagcagctcagggctcgccaaattactgctcagcaa
ataaacaaactggaagaattatggaaggaaaacccttctgcaacattggaggatctggaa
aagcctggtgttgatgaggaaccacagcatgttttgcttcggtatgaagatgcttatcag
taccaaaatatatttgggcctcttgttaagcttgaagcggactatgacaaaaaactgaag
gagtctcagacacaagataacataacagtgcgatgggaccttggccttaacaagaagagg
attgcttacttcactctaccaaaaactgattcagatatgcgattaatgcaaggagatgaa
atatgtttgagatacaaaggtgaccttgcacctttatggaaaggaattgggcatgtgatc
aaggtccctgacaattatggtgatgaaattgccatagagctgagaagcagcgttggtgct
ccagtggaagttactcacaatttccaagtggactttgtatggaagtcaacatcatttgac
agaatgcagagtgcattgaaaacctttgcagtagatgagacttcagtttccggttacatc
tatcacaaacttctgggtcatgaagtggaagatgtaattataaaatgccagcttcccaag
aggttcacagcacaaggattaccagatctcaaccattcacaggtttatgcagtgaagacc
gttctgcaacgacctcttagccttattcaggggccacctggtactggaaaaactgtaacc
tctgcaacaattgtgtatcatcttgctagacagggaaatggccctgtcttagtgtgtgct
ccaagcaatattgctgtagatcaattgactgagaaaatacatcaaactggactcaaagtt
gttcgtctctgtgcaaagagccgtgaagctattgattctccagtttctttcttggcactg
cacaatcagatccgcaacatggaaagtatgccagagctccagaaattgcagcagttgaaa
gatgagacaggagaactatcatcggctgatgagaaaagatacagagctcttaaaagaaca
gctgaaagagaattactaatgaatgctgatgtgatttgctgtacatgtgttggagctgga
gatcctaggcttgctaaaatgcagttccgttcaattttgattgatgaaagtactcaagca
acagagcctgaatgtatggtaccagttgtgcttggagcaaaacagctaatacttgtaggc
gatcactgtcagcttggtccagttgtgatgtgtaaaaaagctgcaaaggctgggctgtct
cagtctctgtttgagagacttgtggtccttggcatcagaccaattcgccttcaggttcag
tacaggatgcatcctgccctcagtgcttttccatcaaacattttctatgaagggtccctt
caaaatggagtaactgcagcggatcgtgtaaagaaaggctttgacttccagtggccacaa
ccagacaaaccaatgtttttttatgtaacccagggacaagaagagattgctagttcaggg
acctcttatctaaacaggactgaagctgctaatgttgagaagattactaccaaacttctg
aaggcaggtgccaaaccagaccagattggtataattactccatacgaagggcagagatcc
tatttggttcagtacatgcaattcagtggctctttgcacactaagctctatcaggaggtg
gaaattgccagtgtagatgcctttcaaggaagagagaaagactttattattctttcttgt
gtccgtgcaaatgagcaccagggaattggtttcttaaatgatccccgtcgtttgaatgtg
gcattgacaagagcaaggtatggggttataattgtgggaaacccaaaagcactttcaaag
cagcccctgtggaaccaccttctaaattactacaaagaacaaaaagttctcgttgaaggg
cccctcaacaatcttagagagagtctcatgcagtttagcaaacctcgaaaacttgtaaac
actattaatcctggggcacgttttatgacaacagcaatgtatgatgcccgtgaagcaata
atacctggatctgtgtatgacagaagtagtcaagctcgaccctcaaacatgtacttccaa
actcatgatcagatcggcatgattagctctggacccagtcatgtaactgcaatgaacatt
ccaataccatttaatttggtcatgcctccaatgcctccaccaagttattttggacaggcc
aatggaccaactgcagctcattcatacattgaccgtgtttcccaaggtcgtggaatgcct
aaagggaaagctacccgtggtgggcggcagaaacagagaggcattgggcttcaaggcatg
agtcagggaaatatgccaaatagtcaagccagtcaagatgtagtgtcccagccattttca
caaggacctctaacacagggatacatatctatgagccaaccatcacagatgagccagcca
ggactttctcaaccagaattatcacaggatagctaccttggtgatgaatttaagtcgcag
attgatgttgcattatcgcaggactctacttaccaaggggagcgagcttatcaacttgga
ggtgtgaccgggctgtcacagtactag
DBGET
integrated database retrieval system
