Hyla sarda (Sardinian treefrog): 130369096
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Entry
130369096 CDS
T11475
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
hsq Hyla sarda (Sardinian treefrog)
Pathway
hsq03018
RNA degradation
hsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130369096 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
130369096 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsq03019
]
130369096 (LSM8)
03041 Spliceosome [BR:
hsq03041
]
130369096 (LSM8)
Messenger RNA biogenesis [BR:
hsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130369096 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
130369096 (LSM8)
Spliceosome [BR:
hsq03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130369096 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
130369096
NCBI-ProteinID:
XP_056429814
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All DBs
Position
4:complement(242819705..242833046)
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AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVN
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcagcgctggagaattatatcaaccgaacggttgcagttattacagctgatggg
aggatgattgtgggaacacttaagggatttgatcagactattaacctaattttggatgag
agccatgagcgagtattcagttcatcacaaggagtagaacaagtagtcctgggactgtac
attgtaagaggcgacaatgtggctgttatcggagagatcgatgaagagacagactctgca
ctggacctggggaatataagagctgagcctctgaactctgttgtaaattga
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integrated database retrieval system
