Halorubrum ruber: J7656_00070
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Entry
J7656_00070 CDS
T07186
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hss
Halorubrum ruber
Pathway
hss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7656_00070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hss03019
]
J7656_00070
03016 Transfer RNA biogenesis [BR:
hss03016
]
J7656_00070
Enzymes [BR:
hss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J7656_00070
Messenger RNA biogenesis [BR:
hss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J7656_00070
Transfer RNA biogenesis [BR:
hss03016
]
Prokaryotic type
tRNA degradation factors
J7656_00070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QUO47819
UniProt:
A0A8T8LKX8
LinkDB
All DBs
Position
11143..12444
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AA seq
433 aa
AA seq
DB search
MSDDEPKQGSAEDQGPVTITPALADRLAEKREELFEEFEIRDEFPSEVLREAEARTEGVY
EEIEAEIDEREDLRDLTTWTTDPVDAQDFDDAISIEREEDAYRLWVHIADVTHYVTPDTA
MWEEAVERANTVYLPDYTIHMLPPVLAETVCSLVPNEDRLAHTVEMEIDDETLSFEDIDI
YKSVINSDERLTYKECENRLEDPDLPLSEENQLAFELADRMHEQRKADGSLVLNPRRDRA
HTIIEESMLKANKAVTHTLMWDRGVEAMYRVHPQPTPDQWNEALKEIQELDGVSIPGDAW
GDDPRKAVNAALEESPERQLNKIQRAVLKVMPRAKYMNDPFGGHHALNFDIYGHFTSPIR
RLSDTINHWIVHENDVPETLVELCDHASDKQKDGETAERLYKQFLQEQGLDPYAVNNRGV
EVVEDPEEAKHTV
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgagccgaagcaagggtccgccgaggaccagggccccgtgacgatcacg
ccggcgctcgcggaccgcctcgccgagaagcgcgaggaactgttcgaggagttcgagatc
cgcgacgagttcccgagcgaggtcctccgcgaggccgaggcccggaccgagggcgtctac
gaggagatcgaagccgagatcgacgagcgcgaggacctccgcgacctcaccacgtggacc
accgacccggtcgacgcgcaggacttcgacgacgccatctccatcgagcgcgaggaggac
gcctaccggctgtgggtccacatcgccgacgtcacccactacgtcacgcccgacaccgcg
atgtgggaggaggcagtcgagcgcgccaacaccgtctacctgccggactacacgatccac
atgctcccgccggtgctggccgagaccgtctgctcgctcgtcccgaacgaggaccggctc
gcgcacaccgtcgagatggagatcgacgatgagaccctctccttcgaggacatcgacatc
tacaagtccgtcattaactccgacgagcggctcacctacaaggagtgcgagaaccggctg
gaggaccccgacctgccactgagcgaggagaaccagctcgccttcgagctcgcggaccgg
atgcacgagcagcgcaaggcggacggctccctcgtcttgaacccgcgacgcgaccgcgcg
cacaccatcatcgaggagtcgatgctgaaggcgaacaaggcggtcacgcacacgctgatg
tgggaccgcggcgtcgaggcgatgtaccgcgtccacccgcagccgacccccgaccagtgg
aacgaggctttaaaagagatccaagaactcgacggcgtctccatccccggcgacgcgtgg
ggcgacgacccgcggaaggcggtcaacgccgccctcgaagagtcccccgagcgccagctc
aacaagatccagcgcgccgtgctgaaggtgatgccccgtgcgaagtacatgaacgacccg
ttcggcggccaccacgcgctcaacttcgacatctacggccacttcacctcgcccatccgc
cgcctgtcggacacgatcaaccactggatcgtccacgagaacgacgtgcccgagaccctc
gtcgagctctgcgaccacgccagcgacaagcagaaggacggcgagaccgcggagcgactt
tataagcagttcctccaggagcaggggctcgacccgtacgcggtcaacaaccgcggcgtc
gaggtcgtcgaggaccccgaggaagcgaaacacaccgtctga
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