Halorubrum ruber: J7656_07350
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Entry
J7656_07350 CDS
T07186
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hss
Halorubrum ruber
Pathway
hss04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
J7656_07350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hss03019
]
J7656_07350
03009 Ribosome biogenesis [BR:
hss03009
]
J7656_07350
04131 Membrane trafficking [BR:
hss04131
]
J7656_07350
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hss04147
]
J7656_07350
Messenger RNA biogenesis [BR:
hss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
J7656_07350
Ribosome biogenesis [BR:
hss03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
J7656_07350
Membrane trafficking [BR:
hss04131
]
SNARE
SNARE associated proteins
Others
J7656_07350
Autophagy
Aggrephagy
Other aggrephagy associated proteins
J7656_07350
Exosome [BR:
hss04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
J7656_07350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_5
TIP49
AAA_22
AAA_2
AAA_14
AAA_33
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
AAA_7
IstB_IS21
Mg_chelatase
AAA_25
Sigma54_activat
ATPase
ABC_tran
NB-ARC
AAA_17
DUF815
AAA_18
nSTAND_NTPase5
AAA_3
Parvo_NS1
TsaE
AAA_24
AAA_30
AAA_11
Vps4_C
Zeta_toxin
AAA_lid_PRS2_C
SLFN-g3_helicase
NACHT
PhoH
IPT
Zot
Motif
Other DBs
NCBI-ProteinID:
QUO49137
UniProt:
A0A8T8LQ01
LinkDB
All DBs
Position
complement(1472495..1474717)
Genome browser
AA seq
740 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTVRVDGFTRQNADVGIGERVTIRKAEAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPDGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLQSEIQRVREMVELPMKHPQIFSKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPALRRPGRFDREIEIGVPDEV
GRKEILQIHTRGMPLSDDVSLDHLADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
EVPPSLIDRMIVKRDDFSGALNEVEPSAMREVLVELPKISWDNVGGLEDAKQQVQESVEW
PLTSPEKFDRMGVDAPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDSLAPSRGQEMGNNVSERVVNQLLTELDGLEDMGDV
MVIGATNRPDMIDPALLRSGRFDRLVMIGQPDQEGREQILDIHTRDTPLAPDVSLREVAE
ITDGYVGSDLEGIAREAAIEALRDDDDAEEVEMKHFRRAMESVRPTINDDILAYYEDVKE
QFKGGGGESLRDTGGRIGFQ
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactcgaagtggcgaaggcgtacccgaacgactcggggcgcggcatc
gcccgactcgaccccgacaccctgctgcacctgaagctctcgcccggcgacatcatcgag
atcgagggcgcggagacgaccgccgcgaaggtctggcgcgccgaccgccaggactggaac
accgacaccgtccgcgtggacgggttcacccgacagaacgcggacgtcggcatcggcgag
cgcgtcaccatccggaaggcggaggcggagaaggccgacaagctcgtgctggccccaccc
gaggaggcgtcggtccagttcggctccgacgccgccggcatggtgaaacgccagatcctc
aagcgcccggtcgtcgagcgcgacatcgtccccgtgatgtcgtcgacgaaccacccgttc
atgcggtcgcccgggcaggcgatcccgctgatcgcggtcgaaacggagccggacggcgtc
tgtctcatcaccgaggacaccgaggtcgagcttcgcgaggagccgatctccgggttcgag
aagaccggcggcggaattacgtacgaggacatcggcgggctccagtcggagatccagcgc
gtccgcgagatggtcgagctgccgatgaaacacccgcagatcttctcgaagctcggcatc
gagccgccgcagggcgtcctgctccacggcccgccgggcaccgggaagacgctgctcgcg
aaggccgtcgccaacgagacctcggcgtcgttcttctcgatcgccggcccggagatcatc
tcgaagtactacggcgagtccgaacagcagctccgggagatcttcgaggatgccaaagag
gagtcgccctcgatcatcttcatcgacgagctcgactcgatcgcgccgaagcgcgaggac
gtgactggcgaggtcgagcgccgcgtcgtcgcccagctgctgacgatgatggacgggtta
gagacccgcggacaggtgatcgtcatcggggcgacgaaccgcgtcgacagcgtcgacccc
gcgctccgccggccgggtcgcttcgaccgcgagatcgagatcggcgtccccgacgaggtg
ggccgcaaggagatcctccagatccacacccgcgggatgccgctctccgacgacgtgagc
ctcgatcacctcgcggacgagacgcacgggttcgtcggcgccgacatcgagagcctcacc
aaggaggcggcgatgaaggcgctccggcgctacctccccgagatcgatctcgacgaggag
gaggtacccccgagcctcatcgaccggatgatagtcaagcgcgacgacttctcgggcgcc
ctcaacgaggtcgagccgtcggcgatgcgcgaggtgctcgtcgagctgccgaagatctcg
tgggacaacgtcggcgggctcgaggacgccaaacagcaggtccaggagtcggtggagtgg
ccgctcacctcgccggagaagttcgaccggatgggcgtcgacgcgccgaagggcgtgctg
ctgtacggcccgcccggcaccgggaagacgctgatggcgaaggcggtcgccaacgagacg
aacgcgaacttcatctcggtcagggggccgcagctgctctcgaagtgggtcggggagtcg
gagaaggcgatccggcagaccttccggaaggcccggcaggtgagcccgacgatcatcttc
ttcgacgagctcgacagcctcgcgccctcgcgcgggcaggagatggggaacaacgtctcg
gagcgcgtcgtcaaccagctcctcaccgaactggacggcctcgaggacatgggcgacgtg
atggtgatcggcgccaccaaccgcccggacatgatcgacccggcgctgctgcgctcgggg
cggttcgaccgtctcgtgatgatcggccagcccgaccaggagggccgcgagcagatcctc
gacatccacacccgggacacgccgctcgcgcccgacgtgagcctccgcgaggtcgccgag
atcaccgacggctacgtcggctccgacctcgaggggatcgcccgcgaggccgccatcgag
gcgctgcgcgacgacgacgacgccgaggaggtcgagatgaagcacttccggcgcgcgatg
gagtcggtgcgcccgacgatcaacgacgacatcctcgcgtactacgaggacgtcaaagag
cagttcaagggcggcggcggcgagtcgctccgcgacaccggcggtcggatcggcttccag
tga
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