Harpegnathos saltator (Jerdon's jumping ant): 105182511
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Entry
105182511 CDS
T03918
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hst
Harpegnathos saltator (Jerdon's jumping ant)
Pathway
hst03013
Nucleocytoplasmic transport
hst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105182511
03015 mRNA surveillance pathway
105182511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hst03019
]
105182511
Enzymes [BR:
hst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105182511
5.6.2.5 RNA 5'-3' helicase
105182511
Messenger RNA biogenesis [BR:
hst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105182511
mRNA cycle factors
Common to processing body (P body) and stress granule
105182511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
nSTAND3
SRP54
AAA_22
AAA_16
AAA_32
AAA_10
AAA_7
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
105182511
NCBI-ProteinID:
XP_011138291
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDATQTQSSQ
PIQVNGTSGSSSLDLKITGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYNCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKIIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECNSNFVVDFIWKSTSFDRMQSALRKFAVDDSS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPVQDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKSEQIGVITPY
EGQRAFLVQHMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQALWNHLLNFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGSGQVNGAQNHNPYYQRNMPVDMFSR
THDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQAVQARQNQRNRRGVVST
TRNKSGPRLGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFA
VGEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcgtatgggcccagcagccagaccctgacattcctcgataccgaggag
gctgatctcatcggcgcggacacgcaaggcagcgaatttgacttcacggactttactttg
ccgtcaccgagccagactcaggcttcgcagcacgacgcgacacaaacacaatcgagtcag
cctatacaggtaaatggaacaagtggtagttcatcattggatttgaaaattactggagca
gcccaaagtcttgcagaattacaatttgaagaagaagaggaggaagcttactataatcgt
gatttacctgatcatgcttgtaaatactgtggtatccatgaagcttcttgcgtggtcatg
tgtaatgtctgtcgtaagtggttttgcaatggacgtggtaatacttcaggatcacatatt
atcaatcatctcgtgcgtgctaaacataaggaagtcactttacacagagacggtcctctc
ggtgaaacggtattagaatgttacaactgcgccacgagaaatgtttttgtattgggcttt
attcctgccaaagctgattctgtggttgtgttactttgtcgacaaccatgtgcggcacag
agttccttgaaagatatgaattgggatcaggagcaatggaaacctttgattgaagatcgc
agcttcttatcttggctggtgaaaatcccgtctgagcaggagcagttaagagccagacag
atctctgcgcaacagattaacaaattggaagaactatggcgggacaatgtcgacgcgact
ttccaagatctggaaaaacccggagtagatgaggagccacaacaagttttgctgcgctac
gaagacggatatcaatatcaaaatatttttggtccacttgtaaaattagaagctgattat
gacaaacgattgaaagaatctcagactcaagaaaatatcgaagtacgttgggatgttgga
ttaaataagaagattatcgcatattttatgctggctaaaacggacggtgatatgaaacta
atgcacggtgacgagttgagactccgttaccttggagaacttcataaaccttggtcggga
atcggtcatgtaattaaaatccccgataattatggagaagaagttggaatcgagcttaaa
aacaattctggagcgccaacagaatgcaacagcaacttcgttgttgactttatttggaag
agtacaagtttcgatcgaatgcaatcggcattgcgcaagttcgctgtggatgactcatca
gtatcggcttatatatatcatcggttattgggtcacgaagtggaagaagttttgttccgc
tgtcatcttcctaagcatttcagcgcaccgaatctacccgatttgaacaggtctcaagtg
tacgccgtgaaacacgcggtgcaacgacctttgtccttgatccaagggccacctggcact
ggcaagacagtaacgagcgcaaccatagtttatcaactcgtgaagcaaaacggtggtccg
gttcttgtatgcgcaccctccaacaccgccgttgaccagttgaccgaaaaaatacacaag
tcaaatctgaaggttgtgcgattgtgcgcaaagtcgcgagaagccatcgactcgccggtg
agtttcctcgcgcttcacaatcagatcaaaaacatggagacaaatacggaactgcagaag
ctgcaacagctgaaagacgaaacgggcgagttgtcaagtgtcgatgagaaacgttatagg
cttttgaaaaaagcagcggagaaagagttactggaggcggccgatgtgatctgctgtaca
tgcgtcggtgccggagacccaagattgcacagattgaagttccattcaatactcatcgac
gagagtatgcaggccactgagccggagtgcatggtgccagttgttctaggagccaagcaa
ctgattcttgtcggagatcactgtcaattgggtccggtggtaatgtgtaaaaaggcagcc
agagcaggcctgtcacagtcactattcgaaagattagtagtactcggaatcagacctttt
cggttggaggtgcaataccgaatgcatcctgatctctcacgattcccgtccaatttcttc
tacgagggttctctgcagaacggtgtatgcgctgacgagaggaagttgctgaagatcgac
ttcccttggcctgtacaagacaaaccaatgttcttttacgttacgcaaggtcaagaagag
atagcaggtagcggcacgtcttacttgaatcgcaccgaggcgtccaacgtggagaagata
actactcgatttctacgttgcggtgtgaagtctgagcaaattggggtaatcaccccgtac
gagggccaacgagccttcctggtgcagcatatgcagtatcaaggctccttacattcaaaa
ttgtaccaggagatcgaagtagcgagtgtagacgcttttcaaggacgtgagaaggacatc
attataatgtcctgcgtgcggtccaacgaacatcaaggtatcggattcttgaatgatcct
agaagattgaatgtggcgttgactcgcgcgaagtacggtatcatcatcgtcggcaatccc
aaggtgctctcgaagcaagcactgtggaaccatctgctaaatttctacaaggagcaaaag
gtgctggtcgagggcccgttgaacaatctgaaggaatccatgattcagtttgccaagccg
aagaaactcgtgaacgctgccaatccaggctctcatttcatgtccacatctatgtacgat
gcgcgagaagccttgatccctggctcggtatacgaccgctctggcagtggccaagtgaac
ggtgcgcaaaatcacaacccgtactatcaacgaaacatgccggtggacatgttcagcagg
acccacgacactatcagctatatcagcccggaaagagcacaggcggcgatgaacaacgta
cccgtaccggtgggtatgttcatgaacatggcgcacgtgccgccgcgtttctacaatcag
caccagcaggccgtacaagcgcggcaaaatcagcgtaaccgtcgcggcgtcgtcagcacc
accagaaataagtcaggtccacgtttaggcaaactcagccaaaccgaacagaacacacag
ccgtacagccaaccaggtctgccactcactcagggcacgacacaaggcatgtcgcagccg
ggcttcagtctgtcgcaacctggactaagccaggcagagctttcgcaagactcgttcgct
gtgggtgagttccaatcgcagatggacggcctgttgtcgcaggactcaacttatcagggc
gaccgtagcggtttctatcaatccgggcagtcgcaggccgggggacaattctcccagcct
tattga
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integrated database retrieval system
