Harpegnathos saltator (Jerdon's jumping ant): 105183715
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Entry
105183715 CDS
T03918
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hst
Harpegnathos saltator (Jerdon's jumping ant)
Pathway
hst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105183715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hst03019
]
105183715
03041 Spliceosome [BR:
hst03041
]
105183715
Messenger RNA biogenesis [BR:
hst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105183715
Spliceosome [BR:
hst03041
]
Complex B
Other components
Prp19-related factors
105183715
Complex C
105183715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
PPR
NRDE-2
DHR-2_Lobe_A
Mad3_BUB1_I
TPR_10
ARM_TT21_C
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
105183715
NCBI-ProteinID:
XP_011140322
LinkDB
All DBs
Position
Unknown
AA seq
836 aa
AA seq
DB search
MSLLTHFRTNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSKNLNVVYERALKELPGSY
KLWYNYLRQRVSQLKGRCITNPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYITR
TRQVFDRSLRALPITQHHRIWPLYINFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLI
SIKRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGL
RRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLK
KLIEEAATNPTEDDDIELELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRVKLYEG
QPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIVDARVVFEKATHVPYTKV
DDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSLKVWSM
YADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKGIALFK
WPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEEEHGLA
RHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENTREMCL
RFAEMETKLGEVDRARGIYAYCSQICDPRVTSNFWQVWKEFEVRHGNEDTMREMLRIKRS
VQAMYNTQVNMMSAQMLNNASNQVSDVPVDAMRLLDSKIPSSTDNTSNVKGNIKFVRGVT
EKDGKPESRVNNPDEIDIDMDDDDENDAEVEDIPIEKQVIPSQVFGSLKAVETEDD
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcttacacatttccgaacaaatgaagaagatttgccatatgaggaggagatt
ttacgaaacccatattcggtaaaacactggcaacgctacattgatcatcttaaaaatact
aaaagtaagaatctaaatgtagtatatgaacgagcattgaaggaacttcctggcagttac
aagctatggtataattatcttcgacaacgcgtgagtcagttaaaaggtcgatgcataact
aatccattgtatgaagatgtcaataatgcatttgaacgtgctttggtatttatgcataaa
atgcctcgtatatggatggattattgtacattaatgactgaacaatgctatataacacga
acacgtcaagtgtttgatcgttcactaagggcacttcctattacacagcaccatcgtata
tggccattgtatatcaatttcttgaaaaaacataatgtctatgaaactgctgtcagagtt
tttagaagatatctaaagttggctccagaagatacagaagaatatatagaatatttaata
tctattaaaagacttgatgaggctgctgtaaaactcgcacagattgtcaatcaagatgac
tttgtgtcaaagcatggaaaatcgaatcatcaactatggaatgaattatgtgacttaata
tcaaaaaatccttccaaaataaaatccctgaatgtggatgctattattagaggtggctta
agacggtatacagatcaactgggaccattatggaattcattagcagattattatgttcga
agtggtctttttgaaagggcaagagatatttatgaagaagctatacagactgtaactact
gttagagacttcacgcaagtttttgatgcttatgcacaatttgaggaacttagtcttaag
aaacttatagaagaagcagcgacgaatcctactgaggatgatgatatagaattagaacta
agattagcacgattggaacatctcatggaaaggagattgttgttacttaattctgtatta
ttgcgacaaaacccacacaatgtagcagaatggcataagagagttaagctttacgaagga
caaccacatgagataattaatacatatacagaagcagtacaaacagtacaaccacaattg
gcagttggcaaattacatacattgtgggttgctttcggtaaattttatgaagaaaatggt
caaatagtggatgctagagtagtatttgaaaaggcaactcatgttccatacaccaaagta
gatgatcttgcctcggtatggtgtgagtgggcagagatggaaattagacatggaaattgt
aaagaagctttaaaactcatgcatcgtgctacaacaatgccggctagaaaagtggcttat
catgatgaaacagagacagtgcaaatgagattatacaaatctttaaaagtatggtctatg
tatgcagatttggaagaaagtttcggaacattcaaaacttgcaaagcagtatatgacaaa
ataatcgatctaaaaattgcaactcctcaaattattattaattatggacttttcctagaa
gaaaacaactattttgaagaagcatttagggcatatgaaaaaggtattgcattattcaaa
tggcctaatgtttacgacatttggaatacatatctcacaaagtttttgaaacgctatggc
ggtacaaaattagaacgtaccagagatctatttgagcagtgtttagaatattgtccacca
aagtatgccaaagctctatatttgttatatgcgaaattggaagaagaacatggcttagca
agacatgctatgtctgtatatgagcgagcaacaaatgctgtcctcccagaggaaagattt
gatatgttcaacatatacataaagaaagcagcggatatctatggagtaccaaaaactcgg
caaatatatgaaaaagctatagaagtcttgaatgatgaaaatactagagaaatgtgctta
agattcgcagaaatggaaacgaaattaggagaagtagatagagcaagaggaatatatgca
tattgtagtcaaatatgtgatccaagagttacgtcgaatttctggcaagtttggaaggaa
tttgaagttaggcatgggaatgaggacacaatgcgtgaaatgcttcgaattaagcgtagt
gtacaggctatgtacaatactcaagtaaatatgatgtctgcgcaaatgttaaacaatgca
tctaatcaagtatcagatgttccagttgatgctatgcgtctattagatagtaaaattcca
tcaagcacagataataccagcaacgtcaaaggaaatatcaagtttgtacgtggtgtaaca
gagaaagatggcaagccagagtctcgtgtaaataatccggatgagatcgatatcgatatg
gatgacgatgatgaaaacgatgcagaagtagaagatataccgattgaaaaacaagttata
ccatcgcaagtgtttggtagtttaaaagcagtcgaaactgaagacgattga
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