Harpegnathos saltator (Jerdon's jumping ant): 105184601
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Entry
105184601 CDS
T03918
Name
(RefSeq) tRNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hst
Harpegnathos saltator (Jerdon's jumping ant)
Brite
KEGG Orthology (KO) [BR:
hst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hst03016
]
105184601
Enzymes [BR:
hst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105184601
Transfer RNA biogenesis [BR:
hst03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105184601
Prokaryotic type
tRNA splicing ligases
105184601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
105184601
NCBI-ProteinID:
XP_011141796
UniProt:
E2BMV5
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKISECCWKIKQGFQPNMKVDGVFYVNNTLEKLMFEELRNACRPGTI
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLYEEDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNSRDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYKQVLEKLENLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHTAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagacaatatcaagaagaacttaaatatttagaaaaaataagtgaatgttgt
tggaagataaaacagggctttcaacctaatatgaaggttgatggagtattttatgtgaac
aatactttggaaaaattaatgtttgaagagctacgtaatgcatgtcggccaggtacaatt
ggaggtttccttcctggaatgaaacaaattgctaacgttgctgctttacctggaattgta
tggagatcagttggattgcctgatgtgcactctggatatggttttgctattggtaatatg
gcagcatttgacatgaatgatccaaaatcgattgtctcacctggtggtgtgggttttgac
ataaattgtggtgttcgtttattacgaactaatttgtatgaagaagatgtcttaccagta
aaagagcaacttgcacaaagtatgtttgatcacataccagttggtgttggttctaaagga
attataccaatgaactcacgagatttagaagaagcattagaaatgggaatggattggtcc
ttgcgggaaggttatatttgggctgaagataaagaacactgtgaagaatatggtagaatg
ctcaatgctgacccatcaaaagtatcaatgagagctaagaaacgtggacttcctcaatta
ggtaccttaggtgctggaaatcattatgcagagattcaggtagtagatgagatatatgac
aagtgggcagcatgcaaaatgggtattgaagaaaaaggacaaatttgcgttatgatccat
tcgggaagcagaggatttggtcaccaagttgctacagatgcacttgtgcaaatggaaaaa
gctatgaagcgtgacaatatagaaactaacgatagacaacttgcatgtgctcatattaaa
tcacaagaaggtcaggattacttaaaatcaatggcagctgcagctaattttgcatgggtt
aacaggagttcaatgacattccttagtcgacaggcgtttgcgaaacaattcaactcatct
cctgatgacttagatatgcatgttatttatgatgtttctcataacattgccaaaatagaa
gaacacatggttgatgggaaacagaaaacgcttttagttcatcggaagggatcaacaaga
gcctttccaccgcatcatcctttaattcctgtagactaccaattaacaggacaaccagtt
ttaattggtggtacaatgggaacttgtagttatgttctcactggtacagaacagggtatg
aaagaaacgtttggatcaacgtgtcatggtgctggacgtgccctctcaagagcgaaatca
cgtagaaatctggactataagcaggttttggaaaaattagaaaatttaggcatatctatc
cgagttgcttcaccgaaattagttatggaagaagcaccggaatcctataaaaatgtaaca
gatgtcgtcaatacttgccacacagctggaatctctaagaaatgtattaaattacgacca
attgcagttattaagggataa
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