Harpegnathos saltator (Jerdon's jumping ant): 105191143
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Entry
105191143 CDS
T03918
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hst
Harpegnathos saltator (Jerdon's jumping ant)
Pathway
hst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105191143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hst03019
]
105191143
Enzymes [BR:
hst01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105191143
Messenger RNA biogenesis [BR:
hst03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105191143
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_R3HCC1L
RRM_1
Motif
Other DBs
NCBI-GeneID:
105191143
NCBI-ProteinID:
XP_011152640
UniProt:
E2C8P3
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MEITIQNFRDVLSELDNHLQHATFICIDAEFTGLNSAPDTGPFDTLAQYYTKLRTGSMSF
LLVQFGLSLFTYNSDTKKYSQRSYTFYVFPKQLNYRAPDCRFMCQASSIAFLASQNFDFN
KLFKHGIPYLNINEEEKLIKRMEERQRQKEEYNDAVIPISDTDKPQIEEICSKIEDFLAS
DKEELTIERCNKFMRRLIYQEAKNRWPDKVRIESKIENTWQCLSVQKVGTKEQEEAKENQ
RREKEKLEFDQAVGVSNLLKKVLNSGKTIVGHNMLLDLCHIIRQFVTPLPADYSEFKNLV
HDLFPSLLDTKVICQSQPFKEHISPSSTNLNTLLKIMSKPPFSIPDVEPIEGCSYSISTE
KLHEAGYDAYITGLCFIALSNYLGTIKQSEDAADEVLADSSLLKPFLNKLPVSRLRDVPY
MNLVGKDPKPSRDHVFHITFPKEWKHTDINQLFSPYGGVQISWLTNTTAYVALFRRENTR
EVMNALSKETVCTIQTYLDYQASLSASGVCCEDRKRKLPVGNALDDAIAGKSGNGATPTS
STISLPSLSSNLSKRSSLSISTEVSNDGWEIATGKRRKKRREQNVEVASSRAFAENDAWK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggaaataacgatccagaatttccgggatgtgttgtcggaattggacaatcacttacag
cacgctacctttatttgtatcgatgcagaatttacaggacttaattcagctccagatact
ggtccctttgatacactagctcagtattacaccaagctcagaacaggatctatgagtttc
cttcttgtacagtttggcctatctttatttacatacaactcagatacaaagaaatattct
cagcgttcttacaccttttatgtgttccctaagcaactgaattatcgtgcaccagattgc
agatttatgtgccaagcatcctcaatagcctttctggcgagtcaaaattttgattttaac
aaactctttaagcatggtataccatatcttaatataaatgaagaagagaaacttatcaag
cgtatggaagagagacaaagacaaaaagaagaatacaatgatgcagtaattccaatatca
gacactgacaaacctcaaatcgaggaaatatgttctaagatagaggatttccttgcttcg
gataaagaggagctcacgatagagagatgtaataaatttatgagaaggcttatataccaa
gaggcaaagaacagatggcctgacaaagtaagaatagaaagtaagattgagaacacttgg
cagtgtctttcggtacaaaaggtaggcaccaaggaacaggaagaagcaaaagaaaatcaa
agacgcgaaaaagaaaaattagaatttgaccaggctgtgggagtcagcaatcttctgaag
aaagttctgaattctggaaagacaatagttggacataacatgttgcttgatttgtgtcat
atcatacgtcagtttgtgacacctttgccagcggattattcagaatttaagaatctggtt
catgacttatttcctagtttattggatacaaaagtcatctgtcaatcacagccatttaaa
gagcatatatcaccgtcaagtacaaatctgaacacgctgttaaagattatgagcaaacca
cctttctctattcccgatgtggaacccatagaaggatgcagttattcaatttcgacagag
aagctgcacgaagcaggctacgacgcatacattaccggattgtgcttcattgctttgtct
aattatcttggaacgataaaacaatctgaggatgcagcggatgaggtgttagctgactct
tctttgctaaaaccctttctaaacaagcttcctgtatctagactgagagatgttccgtat
atgaatctagtaggaaaagatccaaaacccagtagagaccacgtatttcatataacattc
cccaaagaatggaagcatacggatataaatcaactttttagcccatacggaggtgtacaa
atttcatggttaacaaatacaacagcgtatgtcgctttgtttcgacgagaaaacacccgt
gaagtaatgaacgctttgtctaaagagactgtttgtacgatacaaacgtatttggattac
caagctagtttaagtgccagtggtgtttgttgcgaggaccgtaaacgaaagttaccagtt
gggaacgcattggatgacgcaatcgccggcaagtccggcaatggtgcaacaccaacttcg
tcaacgatatcattaccaagcttatcgtcaaatttatcaaaacgctcctccctttcgata
tccacagaagtttccaatgacgggtgggagatcgccacaggaaagcgacgtaaaaaacgc
agagaacagaacgtcgaagtggctagtagcagagctttcgcagaaaatgacgcttggaaa
tag
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